Browse Element(s) Details


OsAffx.11932.1.S1_x_at

Description tigr:9630.m00738
TID=OsAffx.11932.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0785010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07810OsAffx.24155.1.S1_x_at9/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.24155.1.S1_at8/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.5111.1.S1_x_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810Os.15849.2.A1_s_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07820Os.11392.2.S1_at11/112+4095838..4098077expressed protein
LOC_Os02g07830Os.50590.2.A1_at10/112+4103384..4105654Cation transport protein, expressed
LOC_Os02g07840Os.1502.1.S1_at11/112+4109767..4112676bZIP transcription factor family protein, expressed
LOC_Os02g07850OsAffx.11932.1.S1_x_at10/112+4112945..4115853hypothetical protein
LOC_Os02g07860OsAffx.24156.1.S1_at11/112+4117565..4118962hypothetical protein
LOC_Os02g07860OsAffx.24156.2.S1_at1/112+4117565..4118962hypothetical protein
LOC_Os02g07870Os.47485.1.S1_at11/112+4120170..4127530Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os02g07880Os.9124.1.S1_at11/112+4129132..4133816expressed protein
LOC_Os02g07890Os.11533.1.S1_at11/112+4134900..4135625expressed protein
LOC_Os02g07900Os.6353.1.S1_at11/112+4135894..4140379Clathrin assembly protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11932.1.S1_x_at--693--2751Chr02:4113624..4113648 (25 bp)
AAGAACAATGCCAATCCATCCATCG
LOC_Os02g07850
OsAffx.11932.1.S1_x_at--388--591Chr02:4113617..4113641 (25 bp)
ATGCCAATCCATCCATCGATCTGAT
LOC_Os02g07850
OsAffx.11932.1.S1_x_at--822--3531Chr02:4113608..4113632 (25 bp)
CATCCATCGATCTGATCTTCTGAGA
LOC_Os02g07850
OsAffx.11932.1.S1_x_at--265--3551Chr02:4113604..4113628 (25 bp)
CATCGATCTGATCTTCTGAGATGTT
LOC_Os02g07850
OsAffx.11932.1.S1_x_at--404--6431Chr02:4113595..4113619 (25 bp)
GATCTTCTGAGATGTTTTTTCCTCT
LOC_Os02g07850
OsAffx.11932.1.S1_x_at--476--9571Chr02:4113593..4113617 (25 bp)
TCTTCTGAGATGTTTTTTCCTCTTT
LOC_Os02g07850
OsAffx.11932.1.S1_x_at--101--8771Chr02:4113556..4113580 (25 bp)
TGTTTGAGATGTTTTAGGTTGGCGA
LOC_Os02g07850
OsAffx.11932.1.S1_x_at--676--791Chr02:4113529..4113553 (25 bp)
ATGTGGATGGTGATCGCCGATGCGC
LOC_Os02g07850
OsAffx.11932.1.S1_x_at--448--9331Chr02:4113516..4113540 (25 bp)
TCGCCGATGCGCACCGGGTGATGAA
LOC_Os02g07850
OsAffx.11932.1.S1_x_at--52--1791Chr02:4113504..4113528 (25 bp)
ACCGGGTGATGAAGCGCACGGCGGA
LOC_Os02g07850
OsAffx.11932.1.S1_x_at--600--8431NONE
GGCCACCGTGGTTGGCGCGATCGGG
NONE
Target Sequence 
AAGAACAATGCCAATCCATCCATCGATCTGATCTTCTGAGATGTTTTTTCCTCTTTTTTTTGTTAATTTGTTTGAGATGT
TTTAGGTTGGCGAGGATGTGGATGGTGATCGCCGATGCGCACCGGGTGATGAAGCGCACGGCGGACGAGGCGTGCGCGCT
CCTCTCGTCGTCGTCGGCGGCGGCGGCGCGCGCGGCTGCGGGCGGCGAGGGAGGCGTCAGGGGCCCGCCGCCGCCCCCGG
GGCAGGCGCCGGCGGCCACCGTGGTTGGCGCGATCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11932.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis