Browse Element(s) Details


Os.1502.1.S1_at

Description gb:AB053473.1
DB_XREF= gi:13365771
GEN=RISBZ4
TID=Os.1502.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.1502 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for RISBZ4, complete cds.
PROD=RISBZ4
FL= gb:AB053473.1 gb:AK069575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0784011/11bZIP transcription factor family protein, expressed
LOC_Os02g166801/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07800OsAffx.11931.1.S1_at10/112+4083020..4086044expressed protein
LOC_Os02g07810OsAffx.24155.1.S1_x_at9/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.24155.1.S1_at8/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.5111.1.S1_x_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810Os.15849.2.A1_s_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07820Os.11392.2.S1_at11/112+4095838..4098077expressed protein
LOC_Os02g07830Os.50590.2.A1_at10/112+4103384..4105654Cation transport protein, expressed
LOC_Os02g07840Os.1502.1.S1_at11/112+4109767..4112676bZIP transcription factor family protein, expressed
LOC_Os02g07850OsAffx.11932.1.S1_x_at10/112+4112945..4115853hypothetical protein
LOC_Os02g07860OsAffx.24156.1.S1_at11/112+4117565..4118962hypothetical protein
LOC_Os02g07860OsAffx.24156.2.S1_at1/112+4117565..4118962hypothetical protein
LOC_Os02g07870Os.47485.1.S1_at11/112+4120170..4127530Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os02g07880Os.9124.1.S1_at11/112+4129132..4133816expressed protein
LOC_Os02g07890Os.11533.1.S1_at11/112+4134900..4135625expressed protein
LOC_Os02g07900Os.6353.1.S1_at11/112+4135894..4140379Clathrin assembly protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1502.1.S1_at--584--5731Chr02:4112028..4112052 (25 bp)
GACGGATGCCAACCAGCAATTCACA
LOC_Os02g07840
Os.1502.1.S1_at--880--1711Chr02:4112039..4112063 (25 bp)
ACCAGCAATTCACAACTTCTGTCAC
LOC_Os02g07840
Os.1502.1.S1_at--912--3911Chr02:4112466..4112490 (25 bp)
CGGCGGCATGTCCAAGTGAAACTAC
LOC_Os02g07840
Os.1502.1.S1_at--212--7371Chr02:4112481..4112505 (25 bp)
GTGAAACTACTGGTCCTACTTCTAT
LOC_Os02g07840
Os.1502.1.S1_at--209--8611Chr02:4112491..4112515 (25 bp)
TGGTCCTACTTCTATGTCAGCTCAG
LOC_Os02g07840
Os.1502.1.S1_at--1078--9652Chr05:2622755..2622777 (23 bp)
TCAGCTCAGCTACGTTTGAAACGTG
NONE
Os.1502.1.S1_at--273--8971Chr02:4112523..4112547 (25 bp)
TGAAACGTGATGTGTCCAAGTGAAC
LOC_Os02g07840
Os.1502.1.S1_at--97--1351Chr02:4112563..4112587 (25 bp)
AGAGTCCTCGTGTCGAAGTGTCATG
LOC_Os02g07840
Os.1502.1.S1_at--1064--7431Chr02:4112572..4112596 (25 bp)
GTGTCGAAGTGTCATGCACTCTTCC
LOC_Os02g07840
Os.1502.1.S1_at--104--3331Chr02:4112588..4112612 (25 bp)
CACTCTTCCCTATTCCTGTAATAGA
LOC_Os02g07840
Os.1502.1.S1_at--309--5472Chr02:4112611..4112635 (25 bp)
GAACTGACTAGCTAAGAGACTGAAA
LOC_Os02g07840
Target Sequence 
GACGGATGCCAACCAGCAATTCACAACTTCTGTCACGGACAACAGAATCCTCAAATCAGACGTTGAGGCCCTCCGGGTCA
AGGTGAAGATGGCGGAGGACATGGTGGCGCGGGGGGCGCTGTCGTGCGGGCTCGGCCACCTGGGCGGGCTGTCGCCGGCG
CTGAACCCCCGGCAGGCGTGCCGCGTCCCCGACGTGCTCGCCGGCCTGGACTACGCCGGCGACGACCCCTTCACGGCCGG
GCTGTCCCAGCCGGAGCAGTTGCAGATGCCCGGCGGCGAGGTGGTTGACGCCTGGGGCTGGGACAACCACCCCAACGGCG
GCATGTCCAAGTGAAACTACTGGTCCTACTTCTATGTCAGCTCAGCTACGTTTGAAACGTGATGTGTCCAAGTGAACGGA
CTTGAGTTTTTCAGAGTCCTCGTGTCGAAGTGTCATGCACTCTTCCCTATTCCTGTAATAGAACTGACTAGCTAAGAGAC
TGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis