Browse Element(s) Details

OsAffx.5111.1.S1_x_at

Description

tigr:9634.m04389
TID=OsAffx.5111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to receptor-like protein kinase
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45240	7/11	Leucine Rich Repeat family protein, expressed
LOC_Os02g07810	1/11	Leucine Rich Repeat family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45170	NA	NA	6	+	27308513..27313034	retrotransposon protein, putative, unclassified
LOC_Os06g45180	NA	NA	6	+	27315963..27316607	Pollen allergen family protein, expressed
LOC_Os06g45190	NA	NA	6	+	27322841..27323414	Pollen allergen family protein, expressed
LOC_Os06g45200	OsAffx.28113.1.S1_at	11/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	OsAffx.28113.1.S1_x_at	10/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	Os.50182.1.S1_at	3/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	Os.24196.1.A1_x_at	3/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	Os.25409.1.S1_x_at	1/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45210	OsAffx.28114.1.S1_x_at	10/11	6	+	27328134..27329359	Pollen allergen family protein, expressed
LOC_Os06g45220	OsAffx.28115.1.S1_at	11/11	6	+	27330981..27331851	hypothetical protein
LOC_Os06g45230	NA	NA	6	+	27332392..27333070	Pollen allergen family protein, expressed
LOC_Os06g45240	OsAffx.5111.1.S1_x_at	7/11	6	+	27334850..27338390	Leucine Rich Repeat family protein, expressed
LOC_Os06g45240	OsAffx.5111.1.S1_at	7/11	6	+	27334850..27338390	Leucine Rich Repeat family protein, expressed
LOC_Os06g45250	OsAffx.5112.1.S1_s_at	11/11	6	+	27340886..27344792	tRNA pseudouridine synthase family protein, expressed
LOC_Os06g45260	NA	NA	6	+	27350995..27354219	transposon protein, putative, unclassified
LOC_Os06g45270	NA	NA	6	+	27354859..27361014	transposon protein, putative, unclassified
LOC_Os06g45280	Os.4929.1.S1_at	11/11	6	+	27362819..27368187	Protein kinase APK1B, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.5111.1.S1_x_at--510--875	1	Chr06:27335490..27335514 (25 bp)	TGTACGACGAGCTGCCGATGCTCAC	LOC_Os06g45240
OsAffx.5111.1.S1_x_at--246--729	1	Chr06:27335464..27335488 (25 bp)	GTGCCGCACGGACACCTCAAGTCGT	LOC_Os06g45240
OsAffx.5111.1.S1_x_at--632--621	1	NONE	GATGGTGGCGTACAAATCGCCCGAA	NONE
OsAffx.5111.1.S1_x_at--864--847	1	NONE	TGGCGTACAAATCGCCCGAATGCGG	NONE
OsAffx.5111.1.S1_x_at--1087--175	1	NONE	ACCGGGAGGCCCAGCAAGAAGAACG	NONE
OsAffx.5111.1.S1_x_at--84--323	1	NONE	CAAGAAGAACGACCTGTGGAGCCTG	NONE
OsAffx.5111.1.S1_x_at--682--647	1	Chr06:27335183..27335207 (25 bp)	GATACTGGAGGTGCTCACCGGCAAG	LOC_Os06g45240
OsAffx.5111.1.S1_x_at--96--967	2	Chr02:4088813..4088837 (25 bp)	TCACCGGCAAGTTCCCGGCGAACTA	LOC_Os02g07810
OsAffx.5111.1.S1_x_at--796--1063	1	Chr06:27335065..27335089 (25 bp)	TTCGACCAGGAGATGCGCGGCGCTC	LOC_Os06g45240
OsAffx.5111.1.S1_x_at--307--409	1	Chr06:27334982..27335006 (25 bp)	CGACGTGGACAAGCGATGGGACCTC	LOC_Os06g45240
OsAffx.5111.1.S1_x_at--115--163	1	Chr06:27334971..27334995 (25 bp)	AGCGATGGGACCTCAGGGATGCCCT	LOC_Os06g45240

Target Sequence

TGTACGACGAGCTGCCGATGCTCACCGTGCCGCACGGACACCTCAAGTCGTCGAACGTCCTCCTCGACGCTGCGTTCGAG
CCCATCCTCAGCGACTACGCCCTCGTTCCCGTCATGACGCCGCGCCACGCCGCGCAGGTGATGGTGGCGTACAAATCGCC
CGAATGCGGGGAGACCGGGAGGCCCAGCAAGAAGAACGACCTGTGGAGCCTGGGGATCCTGATACTGGAGGTGCTCACCG
GCAAGTTCCCGGCGAACTACCACCGGCAGGGGCGGACGGGGACGGACCTGGCGGGGTGGGTGCACTCGGTGGTGCGGGAG
GAGTGGACCGGCGAGGTGTTCGACCAGGAGATGCGCGGCGCTCGCGGCGGCGAGGGCGAGATGGTGAAGCTGCTCAAGGT
CGGCCTCGGCTGCTGCGAGAGCGACGTGGACAAGCGATGGGACCTCAGGGATGCCCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis