Browse Element(s) Details


OsAffx.10351.1.S1_at

Description tigr:9635.m04964
TID=OsAffx.10351.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4909011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49040Os.14932.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55724.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55711.1.S1_at10/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.51367.1.S2_at1/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49050OsAffx.28962.1.S1_at11/117+29368854..29370005hypothetical protein
LOC_Os07g49060NANA7+29371026..29371406hypothetical protein
LOC_Os07g49070OsAffx.10352.1.S1_at11/117+29374568..29379279hypothetical protein
LOC_Os07g49080Os.5154.1.S1_at11/117+29381048..29383329Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g49080OsAffx.16668.1.S1_at1/117+29381048..29383329Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g49090OsAffx.10351.1.S1_at11/117+29383997..29384911hypothetical protein
LOC_Os07g49100Os.34354.1.S1_at8/117+29386369..29388415Pectinesterase family protein, expressed
LOC_Os07g49110Os.15204.1.S1_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.15204.2.S1_x_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_x_at10/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_at9/117+29390754..29400208D-alanine ligase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10351.1.S1_at--392--9231Chr07:29384559..29384583 (25 bp)
TCCAGGACAAGGACAGCAGCGGCAA
LOC_Os07g49090
OsAffx.10351.1.S1_at--905--8231Chr07:29384539..29384563 (25 bp)
GGCAACAGCAAGTCAACCCCATCTA
LOC_Os07g49090
OsAffx.10351.1.S1_at--554--2491Chr07:29384536..29384560 (25 bp)
AACAGCAAGTCAACCCCATCTACGA
LOC_Os07g49090
OsAffx.10351.1.S1_at--480--4011Chr07:29384466..29384490 (25 bp)
CGTCGTCATCGGAGCGGCTCAAGGC
LOC_Os07g49090
OsAffx.10351.1.S1_at--773--5071Chr07:29384346..29384370 (25 bp)
GCACCAATGGCCGTTGGCTGGCCAG
LOC_Os07g49090
OsAffx.10351.1.S1_at--1056--8211Chr07:29384317..29384341 (25 bp)
GGCAAGGACCACGTGGTGTGCATTT
LOC_Os07g49090
OsAffx.10351.1.S1_at--840--1711Chr07:29384310..29384334 (25 bp)
ACCACGTGGTGTGCATTTGGCTGGT
LOC_Os07g49090
OsAffx.10351.1.S1_at--584--3491Chr07:29384269..29384293 (25 bp)
CAGGCGTGCCTTCCGAATGACAGCA
LOC_Os07g49090
OsAffx.10351.1.S1_at--1038--7271Chr07:29384264..29384288 (25 bp)
GTGCCTTCCGAATGACAGCAACTCG
LOC_Os07g49090
OsAffx.10351.1.S1_at--1110--8351Chr07:29384204..29384228 (25 bp)
GGCGGACGGGACGTCATCATCGTCA
LOC_Os07g49090
OsAffx.10351.1.S1_at--782--5751Chr07:29384200..29384224 (25 bp)
GACGGGACGTCATCATCGTCAACGC
LOC_Os07g49090
Target Sequence 
TCCAGGACAAGGACAGCAGCGGCAACAGCAAGTCAACCCCATCTACGACCACGTCCTCCGCCGCCGACGCCACCTCTTCG
TCGTCATCCTCGGCGTCGTCATCGGAGCGGCTCAAGGCGCACCAATCCGGCAAGTCATGCAAGGAGCTCACCGGGCTGTA
CATGTGCCAAGAGATCATGGCGCACGAGGGGTCAATCTGGAGCATCAAGTTCAGCACCAATGGCCGTTGGCTGGCCAGCG
CCGGCAAGGACCACGTGGTGTGCATTTGGCTGGTGGTGGAGGCGAGCTCCCAGGCGTGCCTTCCGAATGACAGCAACTCG
GGCCCCCTCCCGCTGCATCCCCCCGCCGCCACGCCGGCGGACGGGACGTCATCATCGTCAACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis