Browse Element(s) Details


OsAffx.16668.1.S1_at

Description tigr:9635.m04108
TID=OsAffx.16668.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4108011/11hydrolase, alpha/beta fold family protein
LOC_Os07g490801/11Phytochelatin synthetase-like conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41050OsAffx.28851.1.S1_s_at11/117+24553475..24555029NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41060Os.54545.1.S1_at11/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41060OsAffx.28164.2.S1_at1/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41060Os.46481.2.S1_x_at1/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41070Os.12775.1.S1_at9/117+24565848..24568623NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41080OsAffx.16668.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.25481.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.3237.1.S1_at4/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.24649.2.S1_x_at2/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.54545.1.S1_at1/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41090Os.49398.1.S1_at11/117+24590316..24596658Histone deacetylase family protein, expressed
LOC_Os07g41100OsAffx.5589.1.S1_at10/117+24599631..24600744hypothetical protein
LOC_Os07g41110NANA7+24601549..24607538retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16668.1.S1_at--524--9591Chr07:24574384..24574408 (25 bp)
TCATCAATGACTGCTGCTGGACTCC
LOC_Os07g41080
OsAffx.16668.1.S1_at--465--1791Chr07:24574345..24574369 (25 bp)
ACCGTTACAGCAATGCCCTGCTGGA
LOC_Os07g41080
OsAffx.16668.1.S1_at--345--3031Chr07:24574076..24574358 (25 bp)
AATGCCCTGCTGGATGCGTATCTCT
LOC_Os07g41080
OsAffx.16668.1.S1_at--120--7991Chr07:24574065..24574085 (21 bp)
GGATGCGTATCTCTCATCCAAGACC
LOC_Os07g41080
OsAffx.16668.1.S1_at--1070--5892Chr07:24574028..24574052 (25 bp)
GAGCTGCTGCGTTACAACGAGTCGG
LOC_Os07g41080
OsAffx.16668.1.S1_at--669--3251Chr07:24574014..24574038 (25 bp)
CAACGAGTCGGAGAGGCCGGCATTC
LOC_Os07g41080
OsAffx.16668.1.S1_at--115--8431Chr07:24574000..24574024 (25 bp)
GGCCGGCATTCGAGGTGGTGACCTT
LOC_Os07g41080
OsAffx.16668.1.S1_at--87--7191Chr07:24573962..24573986 (25 bp)
GTCGGCGGCGATAGCATCCAGCCCT
LOC_Os07g41080
OsAffx.16668.1.S1_at--758--2171Chr07:24573934..24573958 (25 bp)
ACACGCTGAGCATGCATCCCGGTGA
LOC_Os07g41080
OsAffx.16668.1.S1_at--71--3871Chr07:24573929..24573953 (25 bp)
CTGAGCATGCATCCCGGTGATCGTG
LOC_Os07g41080
OsAffx.16668.1.S1_at--535--8551Chr07:24573498..24573522 (25 bp)
TGGATGAGACACTGGATCATAGCGT
LOC_Os07g41080
Target Sequence 
TCATCAATGACTGCTGCTGGACTCCTCTCAACTTCTCCCACCGTTACAGCAATGCCCTGCTGGATGCGTATCTCTCATCC
AAGACCCTCTCCGAGAAGGAGCTGCTGCGTTACAACGAGTCGGAGAGGCCGGCATTCGAGGTGGTGACCTTGGCGTGCGC
GCTCGTCGGCGGCGATAGCATCCAGCCCTACCACACGCTGAGCATGCATCCCGGTGATCGTGTCGCCGCTCACCGGCCGG
TGGTAGGGGAAGGCGTGAGGGTGAAAGTGGATACAAACAAACTTGTGGATTTGGGGTTCAAGTACAAATATGAAGTGGAT
GAGACACTGGATCATAGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis