Browse Element(s) Details


Os.25481.1.S1_at

Description gb:AK062687.1
DB_XREF= gi:32972705
TID=Os.25481.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-H11, full insert sequence.
FL= gb:AK062687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4108011/11hydrolase, alpha/beta fold family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41050OsAffx.28851.1.S1_s_at11/117+24553475..24555029NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41060Os.54545.1.S1_at11/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41060OsAffx.28164.2.S1_at1/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41060Os.46481.2.S1_x_at1/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41070Os.12775.1.S1_at9/117+24565848..24568623NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41080OsAffx.16668.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.25481.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.3237.1.S1_at4/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.24649.2.S1_x_at2/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.54545.1.S1_at1/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41090Os.49398.1.S1_at11/117+24590316..24596658Histone deacetylase family protein, expressed
LOC_Os07g41100OsAffx.5589.1.S1_at10/117+24599631..24600744hypothetical protein
LOC_Os07g41110NANA7+24601549..24607538retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25481.1.S1_at--339--2471Chr07:24578802..24578826 (25 bp)
AACAGAATTGGATCCTTAAGGCTAG
LOC_Os07g41080
Os.25481.1.S1_at--1079--7831Chr07:24578768..24578792 (25 bp)
GGTACATGTACACTGTTGGCTCAAT
LOC_Os07g41080
Os.25481.1.S1_at--441--6331Chr07:24578743..24578767 (25 bp)
GATGCACATGTGAGTCGGTCGATAT
LOC_Os07g41080
Os.25481.1.S1_at--272--1131Chr07:24578731..24578755 (25 bp)
AGTCGGTCGATATGCTTGGGAAGTT
LOC_Os07g41080
Os.25481.1.S1_at--208--8711Chr07:24578697..24578721 (25 bp)
TGTCCATGCTGTTCGACTCAGAAGA
LOC_Os07g41080
Os.25481.1.S1_at--1075--10791Chr07:24578650..24578674 (25 bp)
TTGTTCTCAGCACATGTTCTGTCTT
LOC_Os07g41080
Os.25481.1.S1_at--906--952Chr07:24578537..24578561 (25 bp)
AGGACATCTCTGCTGATCAGCTGCT
LOC_Os07g41080
Os.25481.1.S1_at--552--391Chr07:24578522..24578546 (25 bp)
ATCAGCTGCTACTCACTTTTAGGTT
LOC_Os07g41080
Os.25481.1.S1_at--1072--2791Chr07:24578477..24578501 (25 bp)
AAGATGTATCATTCCTTCCTCTGTT
LOC_Os07g41080
Os.25481.1.S1_at--1039--9251Chr07:24578461..24578485 (25 bp)
TCCTCTGTTCTTTCTCGCTGAACAT
LOC_Os07g41080
Os.25481.1.S1_at--56--1571Chr07:24578386..24578410 (25 bp)
AGCTATGTTTATCTTTGGGCGAAAT
LOC_Os07g41080
Target Sequence 
AACAGAATTGGATCCTTAAGGCTAGGGTGTAGATGGTACATGTACACTGTTGGCTCAATGATGCACATGTGAGTCGGTCG
ATATGCTTGGGAAGTTGCAATGCTCTGTCCATGCTGTTCGACTCAGAAGATGCTTCACAGTAAAGTTGGAATTTGTTCTC
AGCACATGTTCTGTCTTCTGCAAAAGGGGGGACAATAATCCTGTTGGAGGTGGTTCCGAGGCTGTGCCACGGAGATGGAA
GAATTGGCATAGGAACATATTGAGCAGGACATCTCTGCTGATCAGCTGCTACTCACTTTTAGGTTGTTAGTCAGATAGTG
TTGCAAAGATGTATCATTCCTTCCTCTGTTCTTTCTCGCTGAACATGTTGAATAAACTTCAAGTATGTTTAAGACTGTCT
AGACTGGGAATATGAAAGCTATGTTTATCTTTGGGCGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis