Browse Element(s) Details


Os.12775.1.S1_at

Description gb:AK071832.1
DB_XREF= gi:32981855
TID=Os.12775.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121D11, full insert sequence.
FL= gb:AK071832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g410709/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41030NANA7+24541477..24543148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41050OsAffx.28851.1.S1_s_at11/117+24553475..24555029NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41060Os.54545.1.S1_at11/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41060OsAffx.28164.2.S1_at1/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41060Os.46481.2.S1_x_at1/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41070Os.12775.1.S1_at9/117+24565848..24568623NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41080OsAffx.16668.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.25481.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.3237.1.S1_at4/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.24649.2.S1_x_at2/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.54545.1.S1_at1/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41090Os.49398.1.S1_at11/117+24590316..24596658Histone deacetylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12775.1.S1_at--373--7691Chr07:24566429..24566453 (25 bp)
GGGTACCCCAACATGCAGGACTATG
LOC_Os07g41070
Os.12775.1.S1_at--943--951Chr07:24566413..24566437 (25 bp)
AGGACTATGTCGACCGTTTCGCTGT
LOC_Os07g41070
Os.12775.1.S1_at--202--4211Chr07:24566400..24566424 (25 bp)
CCGTTTCGCTGTCAAGTACCCGGAG
LOC_Os07g41070
Os.12775.1.S1_at--1142--4711Chr07:24565972..24565996 (25 bp)
GCTGGGATTACTTTGAGCGTGCCAA
LOC_Os07g41070
Os.12775.1.S1_at--286--5891Chr07:24565958..24565982 (25 bp)
GAGCGTGCCAAGCAGTATAATTTCT
LOC_Os07g41070
Os.12775.1.S1_at--687--6891Chr07:24565944..24565968 (25 bp)
GTATAATTTCTGTCCTAATGTCTGT
LOC_Os07g41070
Os.12775.1.S1_at--1081--9751Chr07:24565929..24565953 (25 bp)
TAATGTCTGTATTTGTTCCGGCCCT
LOC_Os07g41070
Os.12775.1.S1_at--1162--2711Chr07:24565888..24565912 (25 bp)
CTAAGAAATGTACCCTAAAGCTATC
LOC_Os07g41070
Os.12775.1.S1_at--304--9611Chr07:24565853..24565877 (25 bp)
TCATCGATAATATTACCTCCGTTTC
LOC_Os07g41070
Os.12775.1.S1_at--846--2251Chr01:32644354..32644695 (25 bp)
AAGTCAAAACATCTCGTAACCTGGA
NONE
Os.12775.1.S1_at--67--2091NONE
ACATCTCGTAACCTGGAACGGAGGG
NONE
Target Sequence 
GGGTACCCCAACATGCAGGACTATGTCGACCGTTTCGCTGTCAAGTACCCGGAGATCGCGATAAAGCTTNCAAGGGGTGA
TTGGGAAGGATGTGAGGGTGAAAGCGGATACAAACAAGCTTGGGGATTTGGGGTTCAAGTACAAGTTTACGGTGGAGGAG
ACGTTGGACAGCAGCGTGGAATGTGCCAAGAGGCTGGGATTACTTTGAGCGTGCCAAGCAGTATAATTTCTGTCCTAATG
TCTGTATTTGTTCCGGCCCTTTTACTCCANCCGTATCTAAGAAATGTACCCTAAAGCTATCAGAACATTNTTCATCGATA
ATATTACCTCCGTTTCAGGTTATAAAACGTTTTGACATTGATCAAAGTCAAACTGCTTCAAGNTTAACTAAGNTTATAGA
AAAAACAATAGTATTTTCAACCCAAGACAAATTTATTGNGAAAATATATTCAATTATTGATTTAATAAAACTAATTTGGT
ACTAGGATTATNAAATATTACTATATTTTTTCTATAAACTTANTCAAGNTTGNANTAGTTTGACTTTAACCAAAGTCAAA
ACATCTCGTAACCTGGAACGGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis