Browse Element(s) Details


Os.49398.1.S1_at

Description gb:AK111892.1
DB_XREF= gi:37988555
TID=Os.49398.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079C01, full insert sequence.
FL= gb:AK111892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4109011/11Histone deacetylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41070Os.12775.1.S1_at9/117+24565848..24568623NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41080OsAffx.16668.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.25481.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.3237.1.S1_at4/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.24649.2.S1_x_at2/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.54545.1.S1_at1/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41090Os.49398.1.S1_at11/117+24590316..24596658Histone deacetylase family protein, expressed
LOC_Os07g41100OsAffx.5589.1.S1_at10/117+24599631..24600744hypothetical protein
LOC_Os07g41110NANA7+24601549..24607538retrotransposon protein, putative, unclassified
LOC_Os07g41120Os.52218.1.S1_x_at11/117+24608506..24611994RNA recognition motif family protein
LOC_Os07g41140Os.12644.1.S1_at11/117+24619369..24623214Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0016575biological_processhistone deacetylation
GO:0045604biological_processregulation of epidermal cell differentiation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004406molecular_functionH3/H4 histone acetyltransferase activity
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49398.1.S1_at--889--1271Chr07:24596079..24596103 (25 bp)
AGATCCGGAGAGCTGCCATTGTGTC
LOC_Os07g41090
Os.49398.1.S1_at--952--1291Chr07:24596168..24596192 (25 bp)
AGATGCGGCCGCTAGTTACATCAAC
LOC_Os07g41090
Os.49398.1.S1_at--884--1971Chr07:24596193..24596217 (25 bp)
ACTGCAGCTACCAGAGGCCTGTGAA
LOC_Os07g41090
Os.49398.1.S1_at--199--2951Chr07:24596216..24596240 (25 bp)
AAGGCTGCTTCCCTATGCATTATGG
LOC_Os07g41090
Os.49398.1.S1_at--465--6851Chr07:24596308..24596332 (25 bp)
GTTTGCAGATTAGCCACTTACGCGC
LOC_Os07g41090
Os.49398.1.S1_at--450--9951Chr07:24596326..24596350 (25 bp)
TACGCGCTTAGTTTGTACAGCCAGT
LOC_Os07g41090
Os.49398.1.S1_at--388--5071Chr07:24596481..24596505 (25 bp)
GACCCGATCAAGTTTCCCTAGGATT
LOC_Os07g41090
Os.49398.1.S1_at--759--1471Chr07:24596510..24596534 (25 bp)
AGAATCTAGCTAGCGCTTGTACCCT
LOC_Os07g41090
Os.49398.1.S1_at--43--6631Chr07:24596537..24596561 (25 bp)
GTTGGTCATTGTCTCATTGGTGCTC
LOC_Os07g41090
Os.49398.1.S1_at--1107--2171Chr07:24596595..24596619 (25 bp)
ACACTAGTCGATGTTGCCTGGTTTT
LOC_Os07g41090
Os.49398.1.S1_at--1014--10351Chr07:24596617..24596641 (25 bp)
TTTTCATGCTGTTACCTGGCGAGGA
LOC_Os07g41090
Target Sequence 
AGATCCGGAGAGCTGCCATTGTGTCCTCCATCCAAGACCTACTCCGCCACCCTGATAAGGGGACTAATGGAAGGGAAGCA
CCTGGATGCAGATGCGGCCGCTAGTTACATCAACACTGCAGCTACCAGAGGCCTGTGAAGGCTGCTTCCCTATGCATTAT
GGTTTGTAGTTTTGCACTAAGCATGTAAGTGGCTAACCCACGAATCCACTTATTTTCACTTATAAGTGGGTTTGCAGATT
AGCCACTTACGCGCTTAGTTTGTACAGCCAGTAGGAGCGTACTAGGACTGTAGGAGGAATGATGAGTAGGTTTGCAGGAC
TGTAAAGATAGTGCGTTGATCATTCAGGACCACGGNGGCTTATGTNNAGGCCTCGTGAATGTCCTGCCAATTGGGGAATC
TGGACCCGATCAAGTTTCCCTAGGATTGTTAAGAATCTAGCTAGCGCTTGTACCCTGGGTTGGTCATTGTCTCATTGGTG
CTCTCCGGATTGGTTTGTTTTGGGGTGGAAAAAAAAACACTAGTCGATGTTGCCTGGTTTTTCATGCTGTTACCTGGCGA
GGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis