Browse Element(s) Details


Os.52218.1.S1_x_at

Description gb:AK065696.1
DB_XREF= gi:32975714
TID=Os.52218.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013035K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035K23, full insert sequence.
FL= gb:AK065696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4112011/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41090Os.49398.1.S1_at11/117+24590316..24596658Histone deacetylase family protein, expressed
LOC_Os07g41100OsAffx.5589.1.S1_at10/117+24599631..24600744hypothetical protein
LOC_Os07g41110NANA7+24601549..24607538retrotransposon protein, putative, unclassified
LOC_Os07g41120Os.52218.1.S1_x_at11/117+24608506..24611994RNA recognition motif family protein
LOC_Os07g41140Os.12644.1.S1_at11/117+24619369..24623214Leucine Rich Repeat family protein, expressed
LOC_Os07g41150OsAffx.28853.1.S1_at11/117+24626567..24628037glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os07g41160OsAffx.16669.1.S1_at11/117+24630624..24634572expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52218.1.S1_x_at--299--8151Chr07:24610035..24610059 (25 bp)
GGACAATTTGGTGCCGCGGGTCACA
LOC_Os07g41120
Os.52218.1.S1_x_at--283--7691Chr07:24610018..24610042 (25 bp)
GGGTCACAGCAATGGCGGCTACTCT
LOC_Os07g41120
Os.52218.1.S1_x_at--432--9911Chr07:24609999..24610023 (25 bp)
TACTCTGCCAGCAACTTCAGTAATG
LOC_Os07g41120
Os.52218.1.S1_x_at--878--3411Chr07:24609943..24609967 (25 bp)
CAGTGGACAATCTGGTGCCACCGGT
LOC_Os07g41120
Os.52218.1.S1_x_at--236--1691Chr07:24609885..24609909 (25 bp)
AGCCTCGGTGGCAGCTTTGGTGCAA
LOC_Os07g41120
Os.52218.1.S1_x_at--1010--3111Chr07:24609836..24609860 (25 bp)
AATTTGGTGCCGTGGGTCACAGCAA
LOC_Os07g41120
Os.52218.1.S1_x_at--844--3991Chr07:24609783..24609807 (25 bp)
CGTGGTAGCGGCTTTGGTGCAAACA
LOC_Os07g41120
Os.52218.1.S1_x_at--266--2971Chr07:24609744..24609768 (25 bp)
AATGGACAATATGGTGCCGCGCATG
LOC_Os07g41120
Os.52218.1.S1_x_at--234--3351Chr07:24609696..24609720 (25 bp)
CACGGTGGCGGCTTTGGTGCACAAA
LOC_Os07g41120
Os.52218.1.S1_x_at--942--2291Chr07:24609674..24609698 (25 bp)
AAATGGTGGGTATAGCAGCGGACAA
LOC_Os07g41120
Os.52218.1.S1_x_at--519--6951Chr07:24609534..24609558 (25 bp)
GTAGCAAACTATCATGCGCATCATG
LOC_Os07g41120
Target Sequence 
GGACAATTTGGTGCCGCGGGTCACAGCAATGGCGGCTACTCTGCCAGCAACTTCAGTAATGCTAGCTTTGGTGCAAACAG
TAGTGTATTTAGCAGTGGACAATCTGGTGCCACCGGTCGCAACAACGGTGGCAACTCGGCCAGCAACTTCAGCCTCGGTG
GCAGCTTTGGTGCAAACAATGGTGGAATTAGCAGTGGACAATTTGGTGCCGTGGGTCACAGCAATGGAGGCTACTCTACC
AGCAACTTCAGCCGTGGTAGCGGCTTTGGTGCAAACAGTGGTGGATCCAGCAATGGACAATATGGTGCCGCGCATGGCAA
CAACGGCAGCAACTTCAGCCACGGTGGCGGCTTTGGTGCACAAATGGTGGGTATAGCAGCGGACAATTTGGTGTTGCGGG
TGTTGGAAATATGGTCATAAATCGGCATATTTTAATCCAAAATGTTAAGACAATAATCATGGCATAAACAGTGTAGGGTG
ATCTAGTGAGAACATGTAACAGTAGCAAACTATCATGCGCATCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52218.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis