Browse Element(s) Details


OsAffx.16669.1.S1_at

Description tigr:9635.m04117
TID=OsAffx.16669.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AT3g29575MWE13_2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4116011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41110NANA7+24601549..24607538retrotransposon protein, putative, unclassified
LOC_Os07g41120Os.52218.1.S1_x_at11/117+24608506..24611994RNA recognition motif family protein
LOC_Os07g41140Os.12644.1.S1_at11/117+24619369..24623214Leucine Rich Repeat family protein, expressed
LOC_Os07g41150OsAffx.28853.1.S1_at11/117+24626567..24628037glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os07g41160OsAffx.16669.1.S1_at11/117+24630624..24634572expressed protein
LOC_Os07g41170OsAffx.5590.1.S1_at11/117+24640597..24641572expressed protein
LOC_Os07g41180Os.6262.1.S1_at10/117+24653212..24658153Nuclear transport factor 2 domain containing protein, expressed
LOC_Os07g41190Os.7119.1.S1_at11/117+24658444..24660898WD-repeat protein 50, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16669.1.S1_at--431--4111Chr07:24633754..24633778 (25 bp)
CGCAACTCCATGAACTCCGGCAGGT
LOC_Os07g41160
OsAffx.16669.1.S1_at--340--3471Chr07:24633694..24633718 (25 bp)
CAGGACGCGATGTACCCCACCGGGT
LOC_Os07g41160
OsAffx.16669.1.S1_at--696--8071Chr07:24633639..24633663 (25 bp)
GGAGCACCTCGTCGTGCATGCCAGA
LOC_Os07g41160
OsAffx.16669.1.S1_at--1072--7191Chr07:24633632..24633653 (22 bp)
GTCGTGCATGCCAGAGCAAGGTGTT
LOC_Os07g41160
OsAffx.16669.1.S1_at--955--4751Chr07:24632574..24632598 (25 bp)
GCTGAAGCCATGGACACATCATCTT
LOC_Os07g41160
OsAffx.16669.1.S1_at--212--8151Chr07:24632563..24632587 (25 bp)
GGACACATCATCTTCAGACAATGCT
LOC_Os07g41160
OsAffx.16669.1.S1_at--543--3011Chr07:24632545..24632569 (25 bp)
CAATGCTAGTTGTCAAAACAAACCC
LOC_Os07g41160
OsAffx.16669.1.S1_at--622--4111Chr07:24632471..24632495 (25 bp)
CGAACGGCAGCATGAAGGAGCAGCC
LOC_Os07g41160
OsAffx.16669.1.S1_at--519--5091Chr07:24632405..24632429 (25 bp)
GCACCGGCGACCTGAGGAAGAGCAT
LOC_Os07g41160
OsAffx.16669.1.S1_at--610--8711Chr07:24632360..24632384 (25 bp)
TGTCGTCCAGGGTGGATGGCCCCAA
LOC_Os07g41160
OsAffx.16669.1.S1_at--72--7471Chr07:24632277..24632301 (25 bp)
GTGTGCGTCTGCCACGGCAACTTCC
LOC_Os07g41160
Target Sequence 
CGCAACTCCATGAACTCCGGCAGGTCCGCCGGCGCCGGCGGCGGCGGCCGGGACGACGGCCAGGACGCGATGTACCCCAC
CGGGTTCCAGCTCCGGCGATCCGTCGTGTCGCAGGGGAGCACCTCGTCGTGCATGCCAGAGCAAGGTGTTGGTGTTGGTG
CTGAAGCCATGGACACATCATCTTCAGACAATGCTAGTTGTCAAAACAAACCCCTTCCCCCGACGGCGTCGTCGGGCGGC
GGCGGAGGAGGGAGGCCGCCGGCGAACGGCAGCATGAAGGAGCAGCCGCCGCTGCGGACGCTCCGGTCGCTGACGATGCG
GACGACGAGCACCGGCGACCTGAGGAAGAGCATGATGGAGGACATGCCGATGGTGTCGTCCAGGGTGGATGGCCCCAATG
GCCGGAAGATCGACGGGTTCCTGTACAAGTACAGGAAACGCGAGGAGGTGAGGATCGTGTGCGTCTGCCACGGCAACTTC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis