Browse Element(s) Details


Os.7119.1.S1_at

Description gb:AK112078.1
DB_XREF= gi:37988741
TID=Os.7119.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7119 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C09, full insert sequence.
FL= gb:AK112078.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4119011/11WD-repeat protein 50, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41160OsAffx.16669.1.S1_at11/117+24630624..24634572expressed protein
LOC_Os07g41170OsAffx.5590.1.S1_at11/117+24640597..24641572expressed protein
LOC_Os07g41180Os.6262.1.S1_at10/117+24653212..24658153Nuclear transport factor 2 domain containing protein, expressed
LOC_Os07g41190Os.7119.1.S1_at11/117+24658444..24660898WD-repeat protein 50, putative, expressed
LOC_Os07g41200Os.27494.1.S1_at10/117+24662565..24667626expressed protein
LOC_Os07g41210OsAffx.16670.1.S1_at11/117+24680733..24681179hypothetical protein
LOC_Os07g41220OsAffx.28855.3.S1_x_at4/117+24684175..24686182hypothetical protein
LOC_Os07g41220OsAffx.26553.2.S1_at1/117+24684175..24686182hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7119.1.S1_at--453--5971Chr07:24660377..24660401 (25 bp)
GAGAACCTCACAACCGAGATCGGTG
LOC_Os07g41190
Os.7119.1.S1_at--69--2651Chr07:24660413..24660437 (25 bp)
AACCATGATGCCCAGGTTCTGGCGA
LOC_Os07g41190
Os.7119.1.S1_at--27--2011Chr07:24660531..24660555 (25 bp)
ACTACCCACGGTGCTTGGACTTCAG
LOC_Os07g41190
Os.7119.1.S1_at--118--5071Chr07:24660561..24660585 (25 bp)
GCAGCGGGTTTTTGTCCGTCGGACA
LOC_Os07g41190
Os.7119.1.S1_at--476--6892Chr11:26849897..26850392 (25 bp)
GTATAAGCTGCACCACTACCAAAAT
NONE
Os.7119.1.S1_at--660--6411Chr07:24660638..24660662 (25 bp)
GATCTGAATGTGTTACTCTTTCCCC
LOC_Os07g41190
Os.7119.1.S1_at--595--9871Chr07:24660651..24660675 (25 bp)
TACTCTTTCCCCTATGGGCTGAAAT
LOC_Os07g41190
Os.7119.1.S1_at--324--6911Chr07:24660736..24660760 (25 bp)
GTATCTGTAGTCTAGTTCTTCTGAA
LOC_Os07g41190
Os.7119.1.S1_at--542--10371Chr07:24660770..24660794 (25 bp)
TTTTCTCTCTTTACTTTGGGTGTTG
LOC_Os07g41190
Os.7119.1.S1_at--736--10811Chr07:24660792..24660816 (25 bp)
TTGTAATCCCTTACTCTGGTGCTTA
LOC_Os07g41190
Os.7119.1.S1_at--797--1611Chr07:24660823..24660847 (25 bp)
AGCTGGCAATTTACCCATGTTGTTG
LOC_Os07g41190
Target Sequence 
GAGAACCTCACAACCGAGATCGGTGAAATGAAGTTCAACCATGATGCCCAGGTTCTGGCGATAAGCTCGAGAAAGGAGAG
GAACGGGATGAGGCTTGTGCACGTCCCATCCCTCACCGTGTTCCAGAACTGGCCAGGGCCTCGGTTCAGCCTCCACTACC
CACGGTGCTTGGACTTCAGCCCGGGCAGCGGGTTTTTGTCCGTCGGACATGCTGGTGGAAAGGTTTTGCTGTATAAGCTG
CACCACTACCAAAATGCCTAAGATCTGAATGTGTTACTCTTTCCCCTATGGGCTGAAATGTGACCTGGAAAGAAAATTCA
ACTTTCAACACTGTGTTTCAATTTTGAGAGATATCGATGGTATCTGTAGTCTAGTTCTTCTGAATTCTTTTTTTTTTCTC
TCTTTACTTTGGGTGTTGTAATCCCTTACTCTGGTGCTTAATGCAAAGCTGGCAATTTACCCATGTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis