Browse Element(s) Details


Os.27494.1.S1_at

Description gb:AK066770.1
DB_XREF= gi:32976788
TID=Os.27494.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088M15, full insert sequence.
FL= gb:AK066770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4120010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41170OsAffx.5590.1.S1_at11/117+24640597..24641572expressed protein
LOC_Os07g41180Os.6262.1.S1_at10/117+24653212..24658153Nuclear transport factor 2 domain containing protein, expressed
LOC_Os07g41190Os.7119.1.S1_at11/117+24658444..24660898WD-repeat protein 50, putative, expressed
LOC_Os07g41200Os.27494.1.S1_at10/117+24662565..24667626expressed protein
LOC_Os07g41210OsAffx.16670.1.S1_at11/117+24680733..24681179hypothetical protein
LOC_Os07g41220OsAffx.28855.3.S1_x_at4/117+24684175..24686182hypothetical protein
LOC_Os07g41220OsAffx.26553.2.S1_at1/117+24684175..24686182hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27494.1.S1_at--923--4411Chr07:24663188..24663212 (25 bp)
GCCAGATTTTGCTTCAGCAGACCAA
LOC_Os07g41200
Os.27494.1.S1_at--908--5851Chr07:24663169..24663193 (25 bp)
GACCAAACTGTTACCAAGAGCTCCA
LOC_Os07g41200
Os.27494.1.S1_at--1012--6311Chr07:24663077..24663101 (25 bp)
GATGAACATTCATTGCTCGGCAAGT
LOC_Os07g41200
Os.27494.1.S1_at--147--2851Chr07:24663056..24663080 (25 bp)
AAGTCAGTCAGCCAAGTCGCTTCAA
LOC_Os07g41200
Os.27494.1.S1_at--14--6231NONE
GATGGCGACTTTTTTAAGGACCTGT
NONE
Os.27494.1.S1_at--367--8691Chr07:24662994..24663018 (25 bp)
TGTGCACAGAGGTTGACAGGCTTCA
LOC_Os07g41200
Os.27494.1.S1_at--795--5651Chr07:24662980..24663004 (25 bp)
GACAGGCTTCAATCTGAGAGTTCAG
LOC_Os07g41200
Os.27494.1.S1_at--40--5271Chr07:24662922..24662946 (25 bp)
GAATGCTATTGGTTGAGGATCCACT
LOC_Os07g41200
Os.27494.1.S1_at--469--10071Chr07:24662870..24662894 (25 bp)
TAGTGAATCGCCAAGCACGGTTTTG
LOC_Os07g41200
Os.27494.1.S1_at--320--1331Chr07:24662754..24662778 (25 bp)
AGAGGCAGCTGTCATTTAGTAGTAC
LOC_Os07g41200
Os.27494.1.S1_at--379--8191Chr07:24662694..24662718 (25 bp)
GGAAGCTTAGCAACTACACTACACT
LOC_Os07g41200
Target Sequence 
GCCAGATTTTGCTTCAGCAGACCAAACTGTTACCAAGAGCTCCAAAGCTAACACAGAAAAGCTTCATCGAAGAATTGTAT
TCGATCTGGTAAACGAAATTACAGCTCAGAAGATGAACATTCATTGCTCGGCAAGTCAGTCAGCCAAGTCGCTTCAATTA
AGGAAGTACAACGGATGGCGACTTTTTTAAGGACCTGTGCACAGAGGTTGACAGGCTTCAATCTGAGAGTTCAGCGATAA
AATGCTCTGAAGAGGATGGGGATGAAAGAATGCTATTGGTTGAGGATCCACTGAATGGAATAGAAGATTGGAGCTTCGAT
AGTGAATCGCCAAGCACGGTTTTGGAGATCGAAAGATTAATCTACAAGGACCTCATTGACGAGGTCATATGGGATGAGGC
CACAGGGAAGATGCAAGGTGGACAGTGGAACCTAAAGAGGCAGCTGTCATTTAGTAGTACAAGCTGAATATGCTTGGCAA
TACATGTTTCCCCTNGGAAGCTTAGCAACTACACTACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis