Browse Element(s) Details


OsAffx.28855.3.S1_x_at

Description tigr:9636.m00936
TID=OsAffx.28855.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0982011/11hypothetical protein
LOC_Os03g605005/11hypothetical protein
LOC_Os07g412204/11hypothetical protein
LOC_Os01g625843/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09780Os.53513.1.S1_at11/118+5646337..5649305expressed protein
LOC_Os08g09790OsAffx.15141.3.S1_s_at11/118+5652383..5656315hypothetical protein
LOC_Os08g09790OsAffx.15141.2.S1_at11/118+5652383..5656315hypothetical protein
LOC_Os08g09790Os.50851.1.S1_at6/118+5652383..5656315hypothetical protein
LOC_Os08g09790Os.8747.1.S2_x_at1/118+5652383..5656315hypothetical protein
LOC_Os08g09800Os.55100.1.S1_at1/118+5657234..5663062hAT family dimerisation domain containing protein
LOC_Os08g09810NANA8+5666127..5670105hAT family dimerisation domain containing protein
LOC_Os08g09820OsAffx.28855.3.S1_x_at11/118+5671209..5673331hypothetical protein
LOC_Os08g09830Os.49650.1.S1_at11/118+5675116..5676744Speckle-type POZ protein, putative, expressed
LOC_Os08g09840NANA8+5677595..5680461hAT family dimerisation domain containing protein
LOC_Os08g09850OsAffx.16927.1.S1_at11/118+5682425..5683000hypothetical protein
LOC_Os08g09850OsAffx.21729.1.S1_x_at1/118+5682425..5683000hypothetical protein
LOC_Os08g09860OsAffx.5767.1.S1_at9/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09860Os.28080.1.A1_at2/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09870OsAffx.16928.1.S1_at11/118+5690312..5692276expressed protein
LOC_Os08g09870OsAffx.17566.1.S1_at1/118+5690312..5692276expressed protein
LOC_Os08g09880NANA8+5693915..5696437hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28855.3.S1_x_at--757--3955Chr10:15871045..15871069 (25 bp)
CGGAGCAGACGAGCGGCGGGCAGGC
NONE
OsAffx.28855.3.S1_x_at--413--4011Chr08:5672849..5672873 (25 bp)
CGTCGTCGTCCATGGCCGCAGTTCT
LOC_Os08g09820
OsAffx.28855.3.S1_x_at--707--9334Chr08:5672896..5672920 (25 bp)
TCGCCGGCGGGAGTGTGTGAGCGCG
LOC_Os08g09820
OsAffx.28855.3.S1_x_at--253--5071Chr08:5672923..5672947 (25 bp)
GCAGCGGCGGGCAAAGCAGGCGGTG
LOC_Os08g09820
OsAffx.28855.3.S1_x_at--938--3973Chr08:5672943..5672967 (25 bp)
CGGTGGAGGGCAGAGCGGGCACGAC
LOC_Os08g09820
OsAffx.28855.3.S1_x_at--965--7595Chr10:15871244..15871268 (25 bp)
GGGCACGACGCCGAAGACAGCTTCT
NONE
OsAffx.28855.3.S1_x_at--1076--4291Chr08:5673044..5673068 (25 bp)
CCTTATCTCGTGTCGTCGTCGTCGT
LOC_Os08g09820
OsAffx.28855.3.S1_x_at--679--4174Chr08:5673160..5673184 (25 bp)
CGCCAGCCGCCCTGCAGAGAGGAGA
LOC_Os08g09820
OsAffx.28855.3.S1_x_at--262--3395Chr08:5673163..5673187 (25 bp)
CAGCCGCCCTGCAGAGAGGAGAGAA
LOC_Os08g09820
OsAffx.28855.3.S1_x_at--471--6033Chr08:5673227..5673251 (25 bp)
GAGATGACCTGGCATTCTGACATGT
LOC_Os08g09820
OsAffx.28855.3.S1_x_at--1120--5691Chr08:5673275..5673299 (25 bp)
GACTCGGCCACCACCTCAGACAAAA
LOC_Os08g09820
Target Sequence 
CGGAGCAGACGAGCGGCGGGCAGGCGCGCTGCGGGAGAGGAAGATGGCGCCGACGGGGAGGGGGACGGGGGGAGCGAGGA
TGTCGACGCCGTCGTCGTCCATGGCCGCAGTTCTCACGCCCGCGCCGTCAGCGGCGTCGCCGGCGGGAGTGTGTGAGCGC
GGGGCAGCGGCGGGCAAAGCAGGCGGTGGAGGGCAGAGCGGGCACGACGCCGAAGACAGCTTCTTCCCGCGCCGGCGCCA
CCGGCCGCCTCTCCCTTCTCAAGCGTCGCCGCCGCCGCCGCCTCCCTTATCTCGTGTCGTCGTCGTCGTCGCCGCCGCCG
CAGCCGCCTCCCGGGCCTCTCCGAGGGTCCGACCCCGAGGTCGCACGCGCCGCCACCGGCTGCCGGACCTCCTCCCCACC
CGCCAGCCGCCCTGCAGAGAGGAGAGAAGTGAGAGGGAGAGACGAGGAAGGGAGAGAAGAAGAGGAAGAGATGACCTGGC
ATTCTGACATGTGGGGCCCACATGGGTCTCACGCTGACTCGGCCACCACCTCAGACAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28855.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis