Browse Element(s) Details


OsAffx.17566.1.S1_at

Description tigr:9637.m00305
TID=OsAffx.17566.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0462411/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g308902/11Cytochrome P450 family protein, expressed
LOC_Os08g098701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04560NANA9+2433379..2433843hypothetical protein
LOC_Os09g04570Os.24831.1.S1_x_at10/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04570Os.24831.3.S1_x_at9/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04570Os.53142.1.S1_at2/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04570Os.24831.3.S1_s_at1/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04570Os.24831.4.S1_x_at1/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04580OsAffx.25367.1.S1_at1/119+2439452..2443776retrotransposon, putative, centromere-specific
LOC_Os09g04590NANA9+2445629..2446267hypothetical protein
LOC_Os09g04600OsAffx.17567.1.S1_x_at11/119+2449046..2449436hypothetical protein
LOC_Os09g04600OsAffx.17567.1.S1_at11/119+2449046..2449436hypothetical protein
LOC_Os09g04610OsAffx.22946.1.S1_at1/119+2454233..2456153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04624OsAffx.17566.1.S1_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04624Os.51006.1.S1_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04624Os.51006.2.S1_x_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04640OsAffx.22452.1.S1_x_at1/119+2474500..2476891hypothetical protein
LOC_Os09g04650OsAffx.7693.1.S1_x_at1/119+2477779..2478042hypothetical protein
LOC_Os09g04660Os.38764.1.S1_x_at8/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660Os.54151.1.S1_x_at2/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660Os.45173.1.S1_x_at2/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.31892.2.S1_x_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.17842.1.S1_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.29376.1.S1_x_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04670Os.37769.1.S1_at11/119+2488844..2492529expressed protein
LOC_Os09g04680Os.26592.1.S1_s_at11/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_s_at8/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.3.S1_x_at6/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_x_at4/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04690OsAffx.6175.1.S1_at11/119+2496167..2496809hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0008415molecular_functionacyltransferase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17566.1.S1_at--200--1351Chr09:2458478..2458502 (25 bp)
AGACCTTAAAGCCTGGTGCGAAAAG
LOC_Os09g04624
OsAffx.17566.1.S1_at--564--2751Chr09:2458506..2458530 (25 bp)
AAGACTACGATCATGGCGGTTGGAA
LOC_Os09g04624
OsAffx.17566.1.S1_at--1061--5131Chr09:2458531..2458555 (25 bp)
GCAAAGCTGCTTTCCTGAATATCTT
LOC_Os09g04624
OsAffx.17566.1.S1_at--948--10152Chr09:2458550..2458574 (25 bp)
TATCTTGGATGATCTGGTGACAACA
LOC_Os09g04624
OsAffx.17566.1.S1_at--20--211Chr09:2458576..2458600 (25 bp)
ATTTGGAACCAGATGTCCTTCGCAC
LOC_Os09g04624
OsAffx.17566.1.S1_at--828--771Chr09:2458588..2458612 (25 bp)
ATGTCCTTCGCACATCTGGTTCTTC
LOC_Os09g04624
OsAffx.17566.1.S1_at--25--8596Chr09:2458604..2458628 (25 bp)
TGGTTCTTCTCCTCTGAAGATCTTT
LOC_Os09g04624
OsAffx.17566.1.S1_at--78--2813Chr09:2458620..2458644 (25 bp)
AAGATCTTTGCATTCCTTTGGAGCC
LOC_Os09g04624
OsAffx.17566.1.S1_at--850--8071Chr09:2458639..2458663 (25 bp)
GGAGCCAAATATGTTACCACGTCTT
LOC_Os09g04624
OsAffx.17566.1.S1_at--123--711Chr09:2458649..2458673 (25 bp)
ATGTTACCACGTCTTCACTAGAGCT
LOC_Os09g04624
OsAffx.17566.1.S1_at--1022--10272Chr09:2458686..2458710 (25 bp)
TTTGCTTCCGTCTTGCTTTCATTCT
LOC_Os09g04624
Target Sequence 
AGACCTTAAAGCCTGGTGCGAAAAGAGAAAGACTACGATCATGGCGGTTGGAAGCAAAGCTGCTTTCCTGAATATCTTGG
ATGATCTGGTGACAACATATTTGGAACCAGATGTCCTTCGCACATCTGGTTCTTCTCCTCTGAAGATCTTTGCATTCCTT
TGGAGCCAAATATGTTACCACGTCTTCACTAGAGCTCCCGCCTTTCTCTTTGCTTCCGTCTTGCTTTCATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis