Browse Element(s) Details


OsAffx.6175.1.S1_at

Description tigr:9637.m00315
TID=OsAffx.6175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0469011/11hypothetical protein
LOC_Os03g281402/11phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04624OsAffx.17566.1.S1_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04624Os.51006.1.S1_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04624Os.51006.2.S1_x_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04640OsAffx.22452.1.S1_x_at1/119+2474500..2476891hypothetical protein
LOC_Os09g04650OsAffx.7693.1.S1_x_at1/119+2477779..2478042hypothetical protein
LOC_Os09g04660Os.38764.1.S1_x_at8/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660Os.54151.1.S1_x_at2/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660Os.45173.1.S1_x_at2/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.31892.2.S1_x_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.17842.1.S1_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.29376.1.S1_x_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04670Os.37769.1.S1_at11/119+2488844..2492529expressed protein
LOC_Os09g04680Os.26592.1.S1_s_at11/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_s_at8/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.3.S1_x_at6/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_x_at4/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04690OsAffx.6175.1.S1_at11/119+2496167..2496809hypothetical protein
LOC_Os09g04700OsAffx.17569.1.S1_at11/119+2499021..2499313hypothetical protein
LOC_Os09g04710Os.20237.1.S1_at10/119+2500675..2503379GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04720Os.53719.1.S1_at11/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720OsAffx.17570.1.S1_s_at11/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720OsAffx.17570.1.S1_at1/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04730Os.8274.1.S1_at10/119+2511446..2516209oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os09g04740OsAffx.22947.1.S1_x_at8/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.2.S1_x_at5/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.3.S1_x_at4/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.5.S1_x_at2/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6175.1.S1_at--1001--3491Chr09:2496748..2496772 (25 bp)
CATGGAATAAATTTCGGAGCGACAA
LOC_Os09g04690
OsAffx.6175.1.S1_at--495--8191Chr09:2496721..2496745 (25 bp)
GGAAGCAAGTCATGTCGGTCGAAGA
LOC_Os09g04690
OsAffx.6175.1.S1_at--423--711Chr09:2496710..2496734 (25 bp)
ATGTCGGTCGAAGAGGTCCAAATCC
LOC_Os09g04690
OsAffx.6175.1.S1_at--1111--7191Chr09:2496704..2496728 (25 bp)
GTCGAAGAGGTCCAAATCCTCCAAA
LOC_Os09g04690
OsAffx.6175.1.S1_at--184--1891Chr09:2496393..2496679 (25 bp)
ACGATGAAGGGTTCATTGTCTCCGA
LOC_Os09g04690
OsAffx.6175.1.S1_at--658--5154Chr12:7366784..7366803 (20 bp)
GCAACTCACAGTATAAAAGGCACAC
NONE
OsAffx.6175.1.S1_at--368--1171Chr09:2496295..2496319 (25 bp)
AGTACCGATACACTCACCATAGTTT
LOC_Os09g04690
OsAffx.6175.1.S1_at--78--4252Chr09:2496264..2496288 (25 bp)
CCGGAGGACGCGAAGGCTACTCGCC
LOC_Os09g04690
OsAffx.6175.1.S1_at--1154--1271Chr09:2496236..2496260 (25 bp)
AGATCTCGTCGAACCCTTCCACGGT
LOC_Os09g04690
OsAffx.6175.1.S1_at--524--10638Chr08:9265843..9265867 (25 bp)
TTCCACGGTCGAACTACCAGAATGT
NONE
OsAffx.6175.1.S1_at--372--7777Chr08:9265849..9265873 (25 bp)
GGTCGAACTACCAGAATGTCTAGAA
NONE
Target Sequence 
CATGGAATAAATTTCGGAGCGACAAGGGGAAGCAAGTCATGTCGGTCGAAGAGGTCCAAATCCTCCAAAAAAAACTCCAA
TGCAAGATAGGGGACGATGAAGGGTTCATTGTCTCCGAGTTCTACTCGGAGACTAAGGCAACTCACAGTATAAAAGGCAC
ACCCCCTAAGGGGTTCGGATCATCGAATCATAGTACCGATACACTCACCATAGTTTACGAAGCCGGAGGACGCGAAGGCT
ACTCGCCGGGAGATCTCGTCGAACCCTTCCACGGTCGAACTACCAGAATGTCTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis