Browse Element(s) Details


OsAffx.17570.1.S1_s_at

Description tigr:9637.m00319
TID=OsAffx.17570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0472011/11SWIB complex BAF60b domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04660Os.38764.1.S1_x_at8/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660Os.54151.1.S1_x_at2/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660Os.45173.1.S1_x_at2/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.31892.2.S1_x_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.17842.1.S1_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.29376.1.S1_x_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04670Os.37769.1.S1_at11/119+2488844..2492529expressed protein
LOC_Os09g04680Os.26592.1.S1_s_at11/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_s_at8/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.3.S1_x_at6/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_x_at4/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04690OsAffx.6175.1.S1_at11/119+2496167..2496809hypothetical protein
LOC_Os09g04700OsAffx.17569.1.S1_at11/119+2499021..2499313hypothetical protein
LOC_Os09g04710Os.20237.1.S1_at10/119+2500675..2503379GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04720Os.53719.1.S1_at11/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720OsAffx.17570.1.S1_s_at11/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720OsAffx.17570.1.S1_at1/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04730Os.8274.1.S1_at10/119+2511446..2516209oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os09g04740OsAffx.22947.1.S1_x_at8/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.2.S1_x_at5/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.3.S1_x_at4/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.5.S1_x_at2/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17570.1.S1_s_at--497--591Chr09:2507126..2507150 (25 bp)
ATGCCACCATACCTCGTCTTCAAGC
LOC_Os09g04720
OsAffx.17570.1.S1_s_at--342--7151Chr09:2507111..2507135 (25 bp)
GTCTTCAAGCGACGTCGATTCTAAT
LOC_Os09g04720
OsAffx.17570.1.S1_s_at--951--2671Chr09:2507105..2507129 (25 bp)
AAGCGACGTCGATTCTAATCATCAT
LOC_Os09g04720
OsAffx.17570.1.S1_s_at--642--4091Chr09:2507102..2507126 (25 bp)
CGACGTCGATTCTAATCATCATCAT
LOC_Os09g04720
OsAffx.17570.1.S1_s_at--100--4511Chr09:2507071..2507095 (25 bp)
GCCGTTCTTCAACCACTTCCGAGGG
LOC_Os09g04720
OsAffx.17570.1.S1_s_at--1150--3911Chr09:2507003..2507027 (25 bp)
CGGCGGTGGGCGATTGCCCGAAGAA
LOC_Os09g04720
OsAffx.17570.1.S1_s_at--697--3891Chr09:2506968..2506992 (25 bp)
CTGGTGGACCTGGTGAACCTTCCGA
LOC_Os09g04720
OsAffx.17570.1.S1_s_at--100--7531Chr09:2506965..2506989 (25 bp)
GTGGACCTGGTGAACCTTCCGACAG
LOC_Os09g04720
OsAffx.17570.1.S1_s_at--100--7711Chr09:2506957..2506981 (25 bp)
GGTGAACCTTCCGACAGCCCTGAGG
LOC_Os09g04720
OsAffx.17570.1.S1_s_at--1065--4091Chr09:2506946..2506970 (25 bp)
CGACAGCCCTGAGGGAGTTCGCGGG
LOC_Os09g04720
OsAffx.17570.1.S1_s_at--915--9291Chr09:2506886..2506910 (25 bp)
TCCGCGTCTGGTCACATATCAAGAG
LOC_Os09g04720
Target Sequence 
ATGCCACCATACCTCGTCTTCAAGCGACGTCGATTCTAATCATCATCATCCTTCTGCCGTTCTTCAACCACTTCCGAGGG
GAAACGGGCTGAAGTGGGGAGATGGTGCTGCGGCGGGCTACTGCGGCGGTGGGCGATTGCCCGAAGAAGGTGGCGAAGCT
GGTGGACCTGGTGAACCTTCCGACAGCCCTGAGGGAGTTCGCGGGGGGCCAGTCCCAGATGTCCCACCTCTCTTTCTTCC
TCCGCGTCTGGTCACATATCAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17570.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis