Browse Element(s) Details


Os.37769.1.S1_at

Description gb:AK072233.1
DB_XREF= gi:32982256
TID=Os.37769.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001H21, full insert sequence.
FL= gb:AK109362.2 gb:AK098936.1 gb:AK072233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0467011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04624OsAffx.17566.1.S1_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04624Os.51006.1.S1_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04624Os.51006.2.S1_x_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04640OsAffx.22452.1.S1_x_at1/119+2474500..2476891hypothetical protein
LOC_Os09g04650OsAffx.7693.1.S1_x_at1/119+2477779..2478042hypothetical protein
LOC_Os09g04660Os.38764.1.S1_x_at8/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660Os.54151.1.S1_x_at2/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660Os.45173.1.S1_x_at2/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.31892.2.S1_x_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.17842.1.S1_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.29376.1.S1_x_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04670Os.37769.1.S1_at11/119+2488844..2492529expressed protein
LOC_Os09g04680Os.26592.1.S1_s_at11/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_s_at8/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.3.S1_x_at6/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_x_at4/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04690OsAffx.6175.1.S1_at11/119+2496167..2496809hypothetical protein
LOC_Os09g04700OsAffx.17569.1.S1_at11/119+2499021..2499313hypothetical protein
LOC_Os09g04710Os.20237.1.S1_at10/119+2500675..2503379GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04720Os.53719.1.S1_at11/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720OsAffx.17570.1.S1_s_at11/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720OsAffx.17570.1.S1_at1/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04730Os.8274.1.S1_at10/119+2511446..2516209oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37769.1.S1_at--727--391Chr09:2489364..2489388 (25 bp)
ATCAGGGTGGTGTGCCTGGTTACCA
LOC_Os09g04670
Os.37769.1.S1_at--439--6511Chr09:2489346..2489370 (25 bp)
GTTACCAAGGTAGAGCCCCTGGCTA
LOC_Os09g04670
Os.37769.1.S1_at--908--8151Chr09:2489314..2489338 (25 bp)
GGCAACCAGGAATACCGAGGTCCAC
LOC_Os09g04670
Os.37769.1.S1_at--723--3931Chr09:2489171..2489195 (25 bp)
CGGCAACCCTGTCTTTGCTGGTGGT
LOC_Os09g04670
Os.37769.1.S1_at--395--9131Chr09:2489156..2489180 (25 bp)
TGCTGGTGGTGCACCAGGCTACCAA
LOC_Os09g04670
Os.37769.1.S1_at--623--1331Chr09:2489004..2489028 (25 bp)
AGAGTCTAGTACGAGCATAACGCTA
LOC_Os09g04670
Os.37769.1.S1_at--296--4971Chr09:2488990..2489014 (25 bp)
GCATAACGCTATTTGCTGTCTGTTT
LOC_Os09g04670
Os.37769.1.S1_at--64--7191Chr09:2488973..2488997 (25 bp)
GTCTGTTTTGGAGTCTATCGCATGT
LOC_Os09g04670
Os.37769.1.S1_at--995--10171Chr09:2488949..2488973 (25 bp)
TATACTCTTACCCTGCTTTGCAAAC
LOC_Os09g04670
Os.37769.1.S1_at--842--5131Chr09:2488930..2488954 (25 bp)
GCAAACTCAGTTTCTTATGTGTCGA
LOC_Os09g04670
Os.37769.1.S1_at--357--2571Chr09:2488883..2488907 (25 bp)
AACTGGCGATTGTTTGAGGCACTTC
LOC_Os09g04670
Target Sequence 
ATCAGGGTGGTGTGCCTGGTTACCAAGGTAGAGCCCCTGGCTATCAAGGTGGCAACCAGGAATACCGAGGTCCACCCCCA
CCCCCACCCTCTGCTTACCAGGGCAACAACCCTGGATACCAGGGAGGAGGGCCAGGTTACCATGGTGGCAACCCACCTCC
TTATCAAGCCGGCAACCCACCTCCTTATCAAGCCGGCAACCCTGTCTTTGCTGGTGGTGCACCAGGCTACCAAGGCCAAG
GAGGCAACCCTAGTTACCAGCAAGGCAGCGATAACTACAATGCCGGTGCGCCGGCCTATAAGAGGGATGAGCCAGGGAGG
AATTACCAGTAGAACAACACTGCTAGAACAAATGATATGTAGAGTCTAGTACGAGCATAACGCTATTTGCTGTCTGTTTT
GGAGTCTATCGCATGTATACTCTTACCCTGCTTTGCAAACTCAGTTTCTTATGTGTCGACTAATTACTTCGATGTGTCTG
AAACTGGCGATTGTTTGAGGCACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis