Browse Element(s) Details


Os.51006.2.S1_x_at

Description gb:AK060124.1
DB_XREF= gi:32970142
TID=Os.51006.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H03, full insert sequence.
FL= gb:AK060124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0462411/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04560NANA9+2433379..2433843hypothetical protein
LOC_Os09g04570Os.24831.1.S1_x_at10/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04570Os.24831.3.S1_x_at9/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04570Os.53142.1.S1_at2/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04570Os.24831.3.S1_s_at1/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04570Os.24831.4.S1_x_at1/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04580OsAffx.25367.1.S1_at1/119+2439452..2443776retrotransposon, putative, centromere-specific
LOC_Os09g04590NANA9+2445629..2446267hypothetical protein
LOC_Os09g04600OsAffx.17567.1.S1_x_at11/119+2449046..2449436hypothetical protein
LOC_Os09g04600OsAffx.17567.1.S1_at11/119+2449046..2449436hypothetical protein
LOC_Os09g04610OsAffx.22946.1.S1_at1/119+2454233..2456153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04624OsAffx.17566.1.S1_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04624Os.51006.1.S1_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04624Os.51006.2.S1_x_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04640OsAffx.22452.1.S1_x_at1/119+2474500..2476891hypothetical protein
LOC_Os09g04650OsAffx.7693.1.S1_x_at1/119+2477779..2478042hypothetical protein
LOC_Os09g04660Os.38764.1.S1_x_at8/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660Os.54151.1.S1_x_at2/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660Os.45173.1.S1_x_at2/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.31892.2.S1_x_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.17842.1.S1_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.29376.1.S1_x_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04670Os.37769.1.S1_at11/119+2488844..2492529expressed protein
LOC_Os09g04680Os.26592.1.S1_s_at11/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_s_at8/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.3.S1_x_at6/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_x_at4/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04690OsAffx.6175.1.S1_at11/119+2496167..2496809hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0008415molecular_functionacyltransferase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51006.2.S1_x_at--1116--6031Chr09:2470152..2470176 (25 bp)
GAGATCATCACCGAAGCGCTCTACG
LOC_Os09g04624
Os.51006.2.S1_x_at--904--8251Chr09:2470188..2470212 (25 bp)
GGCACCAACGATTTCATCATCAACT
LOC_Os09g04624
Os.51006.2.S1_x_at--177--3571Chr09:2470205..2470229 (25 bp)
CATCAACTACTTTAATCTGCCTCTC
LOC_Os09g04624
Os.51006.2.S1_x_at--508--5011Chr09:2470236..2470260 (25 bp)
GCAGTCTACACCACGGCGGAGTACA
LOC_Os09g04624
Os.51006.2.S1_x_at--260--5911Chr09:2470308..2470332 (25 bp)
GAGCTCGGTGCCCACAAGATCATAT
LOC_Os09g04624
Os.51006.2.S1_x_at--1007--2211Chr09:2470321..2470345 (25 bp)
ACAAGATCATATTTGCCGGGCTCGC
LOC_Os09g04624
Os.51006.2.S1_x_at--522--6471Chr09:2470506..2470530 (25 bp)
GATACTTACAGTGTTTTGTCCGCCA
LOC_Os09g04624
Os.51006.2.S1_x_at--634--7131Chr09:2470544..2470568 (25 bp)
GTCATACTACGGTTAGTGCTCAATC
LOC_Os09g04624
Os.51006.2.S1_x_at--156--9091Chr09:2470560..2470584 (25 bp)
TGCTCAATCTTGCTCGTGTTTTTTA
LOC_Os09g04624
Os.51006.2.S1_x_at--28--2471Chr09:2470657..2470681 (25 bp)
AACAACCCGTATTAGATAGTGCGAT
LOC_Os09g04624
Os.51006.2.S1_x_at--848--2191Chr09:2470709..2470733 (25 bp)
ACAAATCTATAGTCCTGGGTGACTA
LOC_Os09g04624
Target Sequence 
GAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAACTACTTTAATCTGCCTCTCCG
GCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTCGTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGC
TCGGTGCCCACAAGATCATATTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCG
CCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACGGAGGCCATCGGCAAGCTCAA
CGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACTTACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACT
ACGGTTAGTGCTCAATCTTGCTCGTGTTTTTTATTTTTCATTTTTAAGACCTAAGGTCCGTTGAAAATAAATCCAATAGA
TTATGTGTTTTATAATTTTATTTGAAACAACCCGTATTAGATAGTGCGATGTTTCTATTGATATAGCATGAAAAAATACA
AATCTATAGTCCTGGGTGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51006.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis