Browse Element(s) Details

Os.20237.1.S1_at

Description

gb:AK059484.1
DB_XREF= gi:32969502
TID=Os.20237.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20237 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-203-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F09, full insert sequence.
FL= gb:AK059484.1 gb:AK059766.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g04710	10/11	GDSL-like Lipase/Acylhydrolase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g04640	OsAffx.22452.1.S1_x_at	1/11	9	+	2474500..2476891	hypothetical protein
LOC_Os09g04650	OsAffx.7693.1.S1_x_at	1/11	9	+	2477779..2478042	hypothetical protein
LOC_Os09g04660	Os.38764.1.S1_x_at	8/11	9	+	2480419..2484993	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660	Os.54151.1.S1_x_at	2/11	9	+	2480419..2484993	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660	Os.45173.1.S1_x_at	2/11	9	+	2480419..2484993	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660	OsAffx.31892.2.S1_x_at	1/11	9	+	2480419..2484993	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660	OsAffx.17842.1.S1_at	1/11	9	+	2480419..2484993	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660	OsAffx.29376.1.S1_x_at	1/11	9	+	2480419..2484993	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04670	Os.37769.1.S1_at	11/11	9	+	2488844..2492529	expressed protein
LOC_Os09g04680	Os.26592.1.S1_s_at	11/11	9	+	2493946..2495364	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680	Os.26592.2.A1_s_at	8/11	9	+	2493946..2495364	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680	Os.26592.3.S1_x_at	6/11	9	+	2493946..2495364	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680	Os.26592.2.A1_x_at	4/11	9	+	2493946..2495364	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04690	OsAffx.6175.1.S1_at	11/11	9	+	2496167..2496809	hypothetical protein
LOC_Os09g04700	OsAffx.17569.1.S1_at	11/11	9	+	2499021..2499313	hypothetical protein
LOC_Os09g04710	Os.20237.1.S1_at	10/11	9	+	2500675..2503379	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04720	Os.53719.1.S1_at	11/11	9	+	2504646..2507270	SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720	OsAffx.17570.1.S1_s_at	11/11	9	+	2504646..2507270	SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720	OsAffx.17570.1.S1_at	1/11	9	+	2504646..2507270	SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04730	Os.8274.1.S1_at	10/11	9	+	2511446..2516209	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os09g04740	OsAffx.22947.1.S1_x_at	8/11	9	+	2521416..2526005	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740	OsAffx.22947.2.S1_x_at	5/11	9	+	2521416..2526005	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740	OsAffx.22947.3.S1_x_at	4/11	9	+	2521416..2526005	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740	OsAffx.22947.5.S1_x_at	2/11	9	+	2521416..2526005	retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016298	molecular_function	lipase activity
GO:0016789	molecular_function	carboxylic ester hydrolase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.20237.1.S1_at--198--611	1	Chr09:2501540..2501564 (25 bp)	GAGTGCAACGAGGACTACAACGCCG	LOC_Os09g04710
Os.20237.1.S1_at--133--837	1	NONE	GGCCGACTACGGTTTTGAAAATGCA	NONE
Os.20237.1.S1_at--590--809	1	Chr09:2502982..2503006 (25 bp)	GGACAGGACTCTTCGAGGCCGGTTA	LOC_Os09g04710
Os.20237.1.S1_at--603--447	1	Chr09:2502999..2503023 (25 bp)	GCCGGTTACTTCTGCAGCTTGAGCA	LOC_Os09g04710
Os.20237.1.S1_at--12--595	1	Chr09:2503019..2503043 (25 bp)	GAGCACCTCGTTGTTATGTCAAAAT	LOC_Os09g04710
Os.20237.1.S1_at--1078--225	1	Chr09:2503050..2503074 (25 bp)	AAATACGTCTTCTTTGATGCAATCC	LOC_Os09g04710
Os.20237.1.S1_at--217--633	1	Chr09:2503065..2503089 (25 bp)	GATGCAATCCATCCCACGGAGAAAA	LOC_Os09g04710
Os.20237.1.S1_at--513--127	1	Chr09:2503096..2503120 (25 bp)	AGATCATTGCCGATACAGTCATGAA	LOC_Os09g04710
Os.20237.1.S1_at--824--357	1	Chr09:2503237..2503261 (25 bp)	CATAGATATTCACTCTCTTGGGATC	LOC_Os09g04710
Os.20237.1.S1_at--1024--83	1	Chr09:2503340..2503364 (25 bp)	ATGGACGCCAGTTTCAATGCCAGCC	LOC_Os09g04710
Os.20237.1.S1_at--146--303	1	Chr09:2503355..2503379 (25 bp)	AATGCCAGCCACACTTTAGTGCTTT	LOC_Os09g04710

Target Sequence

GAGTGCAACGAGGACTACAACGCCGTCGCCCGGAGCTTCAACGGCAAGCTTCAGGGGCTCGCCGCCAGGCTCAACAAGGA
CCTCCCCGGCCTCCAACTCGTCTACGCCGACACCTACAAGATCCTCGCCTCCGTCGTCGACAAGCCGGCCGACTACGGTT
TTGAAAATGCAGTGCAAGGTTGCTGTGGGACAGGACTCTTCGAGGCCGGTTACTTCTGCAGCTTGAGCACCTCGTTGTTA
TGTCAAAATGCCAACAAATACGTCTTCTTTGATGCAATCCATCCCACGGAGAAAATGTACAAGATCATTGCCGATACAGT
CATGAACACCACACTTAATGTGTTCCTATAAAGTTTATTAATTTTGTGGATTGATGGATACATATATATACGGGCGGTGA
AAGTACTGTACAAGTTGCTTAATGCGTAAACTAAACAAACACCATAGATATTCACTCTCTTGGGATCATATATATACTAC
GTGATTGTACAAGGATGAACGGACTACTGTATAAATCAAAATATGATCAGTTTTGTAATTAAAGCATGGACGCCAGTTTC
AATGCCAGCCACACTTTAGTGCTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis