Browse Element(s) Details


OsAffx.5767.1.S1_at

Description tigr:9636.m00940
TID=OsAffx.5767.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g098609/11FMN-dependent dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09800Os.55100.1.S1_at1/118+5657234..5663062hAT family dimerisation domain containing protein
LOC_Os08g09810NANA8+5666127..5670105hAT family dimerisation domain containing protein
LOC_Os08g09820OsAffx.28855.3.S1_x_at11/118+5671209..5673331hypothetical protein
LOC_Os08g09830Os.49650.1.S1_at11/118+5675116..5676744Speckle-type POZ protein, putative, expressed
LOC_Os08g09840NANA8+5677595..5680461hAT family dimerisation domain containing protein
LOC_Os08g09850OsAffx.16927.1.S1_at11/118+5682425..5683000hypothetical protein
LOC_Os08g09850OsAffx.21729.1.S1_x_at1/118+5682425..5683000hypothetical protein
LOC_Os08g09860OsAffx.5767.1.S1_at9/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09860Os.28080.1.A1_at2/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09870OsAffx.16928.1.S1_at11/118+5690312..5692276expressed protein
LOC_Os08g09870OsAffx.17566.1.S1_at1/118+5690312..5692276expressed protein
LOC_Os08g09880NANA8+5693915..5696437hAT family dimerisation domain containing protein
LOC_Os08g09890Os.54326.1.S1_at10/118+5700073..5702702expressed protein
LOC_Os08g09900Os.26946.1.S1_at11/118+5707601..5712816hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008891molecular_functionglycolate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5767.1.S1_at--752--6191NONE
GAGGAACTATAATGATGCAGCCGTA
NONE
OsAffx.5767.1.S1_at--1124--8931NONE
TGACATCAAGAACAGTGGTAGGGAA
NONE
OsAffx.5767.1.S1_at--648--1211Chr08:5688618..5688642 (25 bp)
AGTTTTGACTGGGAACCACACTCTT
LOC_Os08g09860
OsAffx.5767.1.S1_at--96--8191Chr08:5688629..5688653 (25 bp)
GGAACCACACTCTTGTGAAGCTCTG
LOC_Os08g09860
OsAffx.5767.1.S1_at--339--8691Chr08:5688642..5688666 (25 bp)
TGTGAAGCTCTGTCAACTCCTTTTT
LOC_Os08g09860
OsAffx.5767.1.S1_at--1088--9451Chr08:5688650..5688674 (25 bp)
TCTGTCAACTCCTTTTTCTCAGGAA
LOC_Os08g09860
OsAffx.5767.1.S1_at--201--7091Chr08:5688653..5688677 (25 bp)
GTCAACTCCTTTTTCTCAGGAAATA
LOC_Os08g09860
OsAffx.5767.1.S1_at--504--8831Chr08:5688748..5688772 (25 bp)
TGATATTAGAAAATTCTGCTGCACT
LOC_Os08g09860
OsAffx.5767.1.S1_at--653--111Chr08:5688760..5688784 (25 bp)
ATTCTGCTGCACTAAAATGTTCTGT
LOC_Os08g09860
OsAffx.5767.1.S1_at--690--2291Chr08:5688774..5688798 (25 bp)
AAATGTTCTGTGATTATGCTCGCAA
LOC_Os08g09860
OsAffx.5767.1.S1_at--205--631Chr08:5688789..5688813 (25 bp)
ATGCTCGCAATTGGCTGTCAGGACT
LOC_Os08g09860
Target Sequence 
GAGGAACTATAATGATGCAGCCGTACAGGTACAGGAATGTGGTTGAGCAGTTCGTCAGAAGAGCCGAGAGAGCTGGGTTC
AAGGCGATTGCACTGACCGTGGACACTCCGTGGCTGGGACGTAGGGAGGCTGACATCAAGAACAGTGGTAGGGAAAGTTT
TGACTGGGAACCACACTCTTGTGAAGCTCTGTCAACTCCTTTTTCTCAGGAAATATTTAGGCTGTTTATCAGTGTATTTG
CAGACCTTGCTGAAACTAGCAGTCTATACCTTCCAAGAATGATTTTGATATTAGAAAATTCTGCTGCACTAAAATGTTCT
GTGATTATGCTCGCAATTGGCTGTCAGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis