Browse Element(s) Details


Os.26946.1.S1_at

Description gb:AK103696.1
DB_XREF= gi:32988905
TID=Os.26946.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136J23, full insert sequence.
FL= gb:AK103696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0990011/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09850OsAffx.16927.1.S1_at11/118+5682425..5683000hypothetical protein
LOC_Os08g09850OsAffx.21729.1.S1_x_at1/118+5682425..5683000hypothetical protein
LOC_Os08g09860OsAffx.5767.1.S1_at9/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09860Os.28080.1.A1_at2/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09870OsAffx.16928.1.S1_at11/118+5690312..5692276expressed protein
LOC_Os08g09870OsAffx.17566.1.S1_at1/118+5690312..5692276expressed protein
LOC_Os08g09880NANA8+5693915..5696437hAT family dimerisation domain containing protein
LOC_Os08g09890Os.54326.1.S1_at10/118+5700073..5702702expressed protein
LOC_Os08g09900Os.26946.1.S1_at11/118+5707601..5712816hAT family dimerisation domain containing protein, expressed
LOC_Os08g09910Os.52269.1.S1_at9/118+5714108..5717477F-box domain containing protein
LOC_Os08g09910Os.54846.1.S1_x_at1/118+5714108..5717477F-box domain containing protein
LOC_Os08g09920Os.40034.1.A1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_x_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920OsAffx.29124.1.S1_at2/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09930Os.51591.1.S1_at11/118+5728864..5729607expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26946.1.S1_at--731--6231Chr08:5708347..5708371 (25 bp)
GATGGCACGCGATATTTTAGCAATA
LOC_Os08g09900
Os.26946.1.S1_at--201--9972Chr08:5708324..5708348 (25 bp)
TACCTGGATGTGCAGTTTCTACTGA
LOC_Os08g09900
Os.26946.1.S1_at--880--1911Chr08:5708275..5708299 (25 bp)
ACGGGCGGAGCTATTTGATGGAAAA
LOC_Os08g09900
Os.26946.1.S1_at--951--951Chr08:5708058..5708082 (25 bp)
AGTGACCTACGTTGGGTACATCCAG
LOC_Os08g09900
Os.26946.1.S1_at--612--3391Chr08:5707921..5707945 (25 bp)
CAGCTCCGTTGGTTTGTTACAGTTG
LOC_Os08g09900
Os.26946.1.S1_at--1146--3431Chr08:5707902..5707926 (25 bp)
CAGTTGTTCAGCTGGATTTCCTGTT
LOC_Os08g09900
Os.26946.1.S1_at--559--6531Chr08:5707888..5707912 (25 bp)
GATTTCCTGTTTCCCATATATCTCT
LOC_Os08g09900
Os.26946.1.S1_at--980--231Chr08:5707873..5707897 (25 bp)
ATATATCTCTGCTTCTGCATGATCA
LOC_Os08g09900
Os.26946.1.S1_at--1116--3511Chr08:5707856..5707880 (25 bp)
CATGATCAATAACACCTGCAGCAGT
LOC_Os08g09900
Os.26946.1.S1_at--855--1011Chr08:5707792..5707816 (25 bp)
AGGTTTTACTGCACTCGCTGGAGAA
LOC_Os08g09900
Os.26946.1.S1_at--392--3091Chr08:5707718..5707742 (25 bp)
AATACTCGTATATTTTCCTGAGCTG
LOC_Os08g09900
Target Sequence 
GATGGCACGCGATATTTTAGCAATACCTGGATGTGCAGTTTCTACTGAATCNGCATTTGATCAGTGTGATCAACGGGCGG
AGCTATTTGATGGAAAATTGCGACCTGAGACAACAGAAGCACTTATATGTGCCCAAAGCTGGATCAAATCATCTGGANCA
GCNGATGCGGATGATGGAAATAAGAACACTTCGTTTTANCCTGCAGTGACCTACGTTGGGTACATCCAGCTCCGTTGGTT
TGTTACAGTTGTTCAGCTGGATTTCCTGTTTCCCATATATCTCTGCTTCTGCATGATCAATAACACCTGCAGCAGTTCTA
CTCTCTGCTTTTCNCCGGGCCATGATTATGAGATCAGGTTTTACTGCACTCGCTGGAGAAATTAAAAGTCTTTTATCTAT
ATAAGCAAAGGATTGTGTTTTGTTTGGAAAATACTCGTATATTTTCCTGAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis