Browse Element(s) Details


Os.40034.1.A1_s_at

Description gb:CB675687
DB_XREF= gi:29679412
DB_XREF=OSJNEe11J04.r
CLONE=OSJNEe11J04
TID=Os.40034.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40034 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0992011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09890Os.54326.1.S1_at10/118+5700073..5702702expressed protein
LOC_Os08g09900Os.26946.1.S1_at11/118+5707601..5712816hAT family dimerisation domain containing protein, expressed
LOC_Os08g09910Os.52269.1.S1_at9/118+5714108..5717477F-box domain containing protein
LOC_Os08g09910Os.54846.1.S1_x_at1/118+5714108..5717477F-box domain containing protein
LOC_Os08g09920Os.40034.1.A1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_x_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920OsAffx.29124.1.S1_at2/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09930Os.51591.1.S1_at11/118+5728864..5729607expressed protein
LOC_Os08g09940Os.9634.1.S1_at11/118+5740394..5745485GTP-binding protein PTD004, putative, expressed
LOC_Os08g09950Os.49536.1.S1_at11/118+5745325..5747403Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os08g09960OsAffx.29126.1.S1_at11/118+5748821..5749249hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40034.1.A1_s_at--214--9791Chr08:5724548..5724666 (25 bp)
TAAGCTTGAATTGAACTACGATAAC
LOC_Os08g09920
Os.40034.1.A1_s_at--340--3671Chr08:5724786..5724810 (25 bp)
CTTTGGTGCTAATGGGTTACCTCTT
LOC_Os08g09920
Os.40034.1.A1_s_at--846--3391Chr08:5724837..5725189 (25 bp)
CAGCACCTACCTTCGTAACATGAAA
LOC_Os08g09920
Os.40034.1.A1_s_at--96--2451Chr08:5725199..5725223 (25 bp)
AAAATTGCCAGGGATGAGCTGCGAA
LOC_Os08g09920
Os.40034.1.A1_s_at--381--7731Chr08:5725230..5725254 (25 bp)
GGTGGTTCCAGCTGTTAAATCTATA
LOC_Os08g09920
Os.40034.1.A1_s_at--523--2731Chr08:5725375..5725399 (25 bp)
AAGCACACTGATTACTCGTCCAAAG
LOC_Os08g09920
Os.40034.1.A1_s_at--706--9951Chr08:5725413..5725437 (25 bp)
TACCTCGGCCCAAGAAATGTTACAA
LOC_Os08g09920
Os.40034.1.A1_s_at--698--10371Chr08:5725464..5725488 (25 bp)
TTTTAGTTTCTTTCCTCGATCTGCA
LOC_Os08g09920
Os.40034.1.A1_s_at--859--10671Chr08:5725495..5725519 (25 bp)
TTCCACTTGGGCATCAACCTTTGAT
LOC_Os08g09920
Os.40034.1.A1_s_at--1077--4771Chr08:5725583..5725607 (25 bp)
GCTCCTCTGGGCATGATGAAACCGT
LOC_Os08g09920
Os.40034.1.A1_s_at--658--6311Chr08:5725597..5725621 (25 bp)
GATGAAACCGTGACTGCCAATTGTA
LOC_Os08g09920
Target Sequence 
TAAGCTTGAATTGAACTACGATAACAAGGAGGCAGTAAATATTGGTGTCAAACTAAAGGAAAGATCATTTGCCTGCAAAA
ATCTTGAAGTGGTGAATATTAGATGCTCTAAAGATGATGGAAGAGTCCATATGTTAGCAGAACTCTTTGGTGCTAATGGG
TTACCTCTTGAGAAGATTTTTGTTCGCCGAACAGGCAGCACCTACCTTCGTAACATGAAAAAAATGAGAAAAATTGCCAG
GGATGAGCTGCGAAAAGCTAGGTGGTTCCAGCTGTTAAATCTATAAACACTACATTCTAAGGACCTGATGGCCAACAAAG
TTAGACTTCAAGCACACTGATTACTCGTCCAAAGTTGTGATCGAGCTTACCTCGGCCCAAGAAATGTTACAAAATAACTA
TGCGATTATTTAGGTAAATTTTAGTTTCTTTCCTCGATCTGCACATTTCTTCCACTTGGGCATCAACCTTTGATGGGCAT
GTCATGCTCCTCTGGGCATGATGAAACCGTGACTGCCAATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40034.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis