Browse Element(s) Details


OsAffx.29124.1.S1_at

Description tigr:9636.m00948
TID=OsAffx.29124.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g099202/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09890Os.54326.1.S1_at10/118+5700073..5702702expressed protein
LOC_Os08g09900Os.26946.1.S1_at11/118+5707601..5712816hAT family dimerisation domain containing protein, expressed
LOC_Os08g09910Os.52269.1.S1_at9/118+5714108..5717477F-box domain containing protein
LOC_Os08g09910Os.54846.1.S1_x_at1/118+5714108..5717477F-box domain containing protein
LOC_Os08g09920Os.40034.1.A1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_x_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920OsAffx.29124.1.S1_at2/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09930Os.51591.1.S1_at11/118+5728864..5729607expressed protein
LOC_Os08g09940Os.9634.1.S1_at11/118+5740394..5745485GTP-binding protein PTD004, putative, expressed
LOC_Os08g09950Os.49536.1.S1_at11/118+5745325..5747403Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os08g09960OsAffx.29126.1.S1_at11/118+5748821..5749249hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29124.1.S1_at--368--7471Chr08:5725536..5725560 (25 bp)
GTGTGCTGATGCTTGAACAAAGTTT
LOC_Os08g09920
OsAffx.29124.1.S1_at--60--10071Chr08:5725565..5725589 (25 bp)
TAGTCAGAAGTTTCTCATGCTCCTC
LOC_Os08g09920
OsAffx.29124.1.S1_at--433--8671Chr08:5725665..5725689 (25 bp)
TGTGTGTCATGCTTGAGCTTGCATT
NONE
OsAffx.29124.1.S1_at--477--1551Chr08:5725680..5725704 (25 bp)
AGCTTGCATTGTTTGCGTAACATCC
NONE
OsAffx.29124.1.S1_at--430--6851Chr08:5725690..5725714 (25 bp)
GTTTGCGTAACATCCCTAGATTGGT
NONE
OsAffx.29124.1.S1_at--1140--4291Chr08:5725704..5725728 (25 bp)
CCTAGATTGGTTTCACCTGAAATGA
NONE
OsAffx.29124.1.S1_at--4--4291Chr08:5725719..5725743 (25 bp)
CCTGAAATGAGCTTCATCATGTACT
NONE
OsAffx.29124.1.S1_at--820--3511Chr08:5725736..5725760 (25 bp)
CATGTACTGTATGGCATCTGCTGAT
NONE
OsAffx.29124.1.S1_at--486--4751Chr08:5725755..5725779 (25 bp)
GCTGATGAGCAGGTCCGAAACACGG
NONE
OsAffx.29124.1.S1_at--529--6771Chr08:5725782..5725806 (25 bp)
GTTACAGTGTTAGTTGGTAGGCTAT
NONE
OsAffx.29124.1.S1_at--842--10791Chr08:5725821..5725845 (25 bp)
TTGTTTCTAGTTTCACTCTGTCAAC
NONE
Target Sequence 
GTGTGCTGATGCTTGAACAAAGTTTGTTTTAGTCAGAAGTTTCTCATGCTCCTCTGGGCATGATGAAACCGTGACTGCCA
ATTGTAAGCAGCTAGCTTCAGGCAGTGCTACAGAATGGTTGGTTTTACTTGTGTGTCATGCTTGAGCTTGCATTGTTTGC
GTAACATCCCTAGATTGGTTTCACCTGAAATGAGCTTCATCATGTACTGTATGGCATCTGCTGATGAGCAGGTCCGAAAC
ACGGATGTTACAGTGTTAGTTGGTAGGCTATTATTAAAGTTTTCTTTGTTTCTAGTTTCACTCTGTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis