Browse Element(s) Details


Os.54846.1.S1_x_at

Description gb:AK106893.1
DB_XREF= gi:32992102
TID=Os.54846.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G08, full insert sequence.
FL= gb:AK106893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0992011/11F-box domain containing protein, expressed
LOC_Os08g099101/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09890Os.54326.1.S1_at10/118+5700073..5702702expressed protein
LOC_Os08g09900Os.26946.1.S1_at11/118+5707601..5712816hAT family dimerisation domain containing protein, expressed
LOC_Os08g09910Os.52269.1.S1_at9/118+5714108..5717477F-box domain containing protein
LOC_Os08g09910Os.54846.1.S1_x_at1/118+5714108..5717477F-box domain containing protein
LOC_Os08g09920Os.40034.1.A1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_x_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920OsAffx.29124.1.S1_at2/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09930Os.51591.1.S1_at11/118+5728864..5729607expressed protein
LOC_Os08g09940Os.9634.1.S1_at11/118+5740394..5745485GTP-binding protein PTD004, putative, expressed
LOC_Os08g09950Os.49536.1.S1_at11/118+5745325..5747403Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os08g09960OsAffx.29126.1.S1_at11/118+5748821..5749249hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54846.1.S1_x_at--977--9971Chr08:5722748..5722772 (25 bp)
TACCATCGTGTTCCCTTGTTCAAAA
LOC_Os08g09920
Os.54846.1.S1_x_at--33--2412Chr08:5722769..5722793 (25 bp)
AAAAACCTGAGCTCACTGGTTGCCG
LOC_Os08g09920
Os.54846.1.S1_x_at--183--8871Chr08:5722807..5722831 (25 bp)
TGATGACTCTTTCTTGTGCCGTGAC
LOC_Os08g09920
Os.54846.1.S1_x_at--922--9171Chr08:5722823..5722847 (25 bp)
TGCCGTGACGATTTCCTCCATGAGG
LOC_Os08g09920
Os.54846.1.S1_x_at--660--5571Chr08:5723034..5723058 (25 bp)
GAAAGTATAGCCACTGCCATGACAG
LOC_Os08g09920
Os.54846.1.S1_x_at--500--10171Chr08:5723075..5723099 (25 bp)
TATCATGACACTTGCAAGCTTGCCA
LOC_Os08g09920
Os.54846.1.S1_x_at--755--4371Chr08:5723097..5723121 (25 bp)
CCAATTCTTTCAGTGGCCAGGATTT
LOC_Os08g09920
Os.54846.1.S1_x_at--161--7871Chr08:5723176..5723200 (25 bp)
GGTATTTCAGGACCTTTTTCTTCTG
LOC_Os08g09920
Os.54846.1.S1_x_at--747--6891Chr08:5723209..5723233 (25 bp)
GTATCAAGTCTTGTTTCCTGTACTT
LOC_Os08g09920
Os.54846.1.S1_x_at--739--7131Chr08:5723216..5723240 (25 bp)
GTCTTGTTTCCTGTACTTGCATTAT
LOC_Os08g09920
Os.54846.1.S1_x_at--874--10311Chr08:5723284..5723308 (25 bp)
TTTCTTTTCTTGGTACTATTCGTCT
LOC_Os08g09920
Target Sequence 
TACCATCGTGTTCCCTTGTTCAAAAACCTGAGCTCACTGGTTGCCGCCACTATCGTACTTGATGACTCTTTCTTGTGCCG
TGACGATTTCCTCCATGAGGATGAAAGGGGAAGCAGCGATGATGAGGATGACAATAAGACTATATCAGATCATTATGATA
AAATGGTTACTAATAGTGATGCATGTGGTGATGGTAATTTGGTTGATGAATACAATTATGGCTCTGATATTGACAGTGAT
GACGATATATATGAATATAGTCAGATAGCAAATGAATGTAGAGATGGAAAGTATAGCCACTGCCATGACAGTGAATGCTG
CAGTAGTTATCATGACACTTGCAAGCTTGCCAATTCTTTCAGTGGCCAGGATTTGCTTTGCAGCCTTTCGAATGCCAGAA
GCTTGGAGTTACTAGCTCATTCAGGGGAGGTATTTCAGGACCTTTTTCTTCTGATAAATTTGTATCAAGTCTTGTTTCCT
GTACTTGCATTATAATAGTTATGATTATGATAAATAGCACATGTAGAACAAACTTGTTTCTTTTCTTGGTACTATTCGTC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54846.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis