Browse Element(s) Details


Os.9634.1.S1_at

Description gb:AK062256.1
DB_XREF= gi:32972274
TID=Os.9634.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G08, full insert sequence.
FL= gb:AK121741.1 gb:AK098917.1 gb:AK062256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0994011/11GTP-binding protein PTD004, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09910Os.52269.1.S1_at9/118+5714108..5717477F-box domain containing protein
LOC_Os08g09910Os.54846.1.S1_x_at1/118+5714108..5717477F-box domain containing protein
LOC_Os08g09920Os.40034.1.A1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_x_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920OsAffx.29124.1.S1_at2/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09930Os.51591.1.S1_at11/118+5728864..5729607expressed protein
LOC_Os08g09940Os.9634.1.S1_at11/118+5740394..5745485GTP-binding protein PTD004, putative, expressed
LOC_Os08g09950Os.49536.1.S1_at11/118+5745325..5747403Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os08g09960OsAffx.29126.1.S1_at11/118+5748821..5749249hypothetical protein
LOC_Os08g09970OsAffx.16930.1.S1_at9/118+5755324..5755828hypothetical protein
LOC_Os08g09980OsAffx.5770.1.S1_at11/118+5764586..5765376hypothetical protein
LOC_Os08g09990OsAffx.16931.1.S1_at11/118+5767689..5770093hypothetical protein
LOC_Os08g09990OsAffx.19106.1.S1_at1/118+5767689..5770093hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9634.1.S1_at--1096--7871Chr08:5743895..5743919 (25 bp)
GGTTTTGCAGCAATCCATCTTATAT
LOC_Os08g09940
Os.9634.1.S1_at--675--10411Chr08:5743914..5743938 (25 bp)
TTATATACTTTTTCACTGCTGGCCC
LOC_Os08g09940
Os.9634.1.S1_at--1094--1971Chr08:5743928..5743948 (21 bp)
ACTGCTGGCCCTGACGAGGTAAAGT
LOC_Os08g09940
Os.9634.1.S1_at--604--4771Chr08:5744544..5744568 (25 bp)
GCTGCTGGTACAATTCACACTGATT
LOC_Os08g09940
Os.9634.1.S1_at--12--1331Chr08:5744574..5744597 (24 bp)
AGAGGCTTCATATGCGCTGAGGTAA
LOC_Os08g09940
Os.9634.1.S1_at--145--2571Chr08:5744969..5744993 (25 bp)
AACTGGGTAGTGAATCTGCTGTGAA
LOC_Os08g09940
Os.9634.1.S1_at--595--9991Chr08:5745201..5745225 (25 bp)
TAGCGTTCCGACAGAGTGGTGCATT
LOC_Os08g09940
Os.9634.1.S1_at--224--1551Chr08:5745369..5745393 (25 bp)
AGCATTCTTGGCATGTTTGTCTTGC
LOC_Os08g09940
Os.9634.1.S1_at--161--9191Chr08:5745391..5745415 (25 bp)
TGCCTGGGTCTACATCTGTAATATT
LOC_Os08g09940
Os.9634.1.S1_at--113--9771Chr08:5745415..5745439 (25 bp)
TAATGGATAACTGCCGTGCATGTTT
LOC_Os08g09940
Os.9634.1.S1_at--144--9051Chr08:5745456..5745480 (25 bp)
TGCAGTCAAATGTGGTTCTTTCCCC
LOC_Os08g09940
Target Sequence 
GGTTTTGCAGCAATCCATCTTATATACTTTTTCACTGCTGGCCCTGACGAGGTAAAGTGTTGGCAGATCAGACGTCAAAC
TAAAGCACCTCAAGCTGCTGGTACAATTCACACTGATTTTGAGAGAGGCTTCATATGCGCTGAGGTAATGAAGTTCGACG
ATCTAAAAGAACTGGGTAGTGAATCTGCTGTGAAGGCTGCTGGAAAATACAGGCAGGAAGGGAAGACCTACGTGGTACAG
GACGGGGATATCATCTTCTTTAAATTTAACGTGTCTGGAGGTGGAAAGAAGTGAGTCAATGTTTGAAGGTGATAGCGTTC
CGACAGAGTGGTGCATTTTACTTTAAACTTCTACACTTAGCTCTGTAGCAATAAACAAGTTATGATTCGATATTTTGTAC
CATGAGGCTATAAAATTATCCAAGGATTGTATGATGAGGCTTTAAATCATTGAAGAAAAAGTGTACGGTTTTGCAATACA
AGCATTCTTGGCATGTTTGTCTTGCCTGGGTCTACATCTGTAATATTAATGGATAACTGCCGTGCATGTTTGGNCAACTC
GCTGTCATGCAGTCAAATGTGGTTCTTTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis