Browse Element(s) Details


OsAffx.16930.1.S1_at

Description tigr:9636.m00955
TID=OsAffx.16930.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g099709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09940Os.9634.1.S1_at11/118+5740394..5745485GTP-binding protein PTD004, putative, expressed
LOC_Os08g09950Os.49536.1.S1_at11/118+5745325..5747403Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os08g09960OsAffx.29126.1.S1_at11/118+5748821..5749249hypothetical protein
LOC_Os08g09970OsAffx.16930.1.S1_at9/118+5755324..5755828hypothetical protein
LOC_Os08g09980OsAffx.5770.1.S1_at11/118+5764586..5765376hypothetical protein
LOC_Os08g09990OsAffx.16931.1.S1_at11/118+5767689..5770093hypothetical protein
LOC_Os08g09990OsAffx.19106.1.S1_at1/118+5767689..5770093hypothetical protein
LOC_Os08g10000OsAffx.29127.1.S1_at11/118+5774462..5774857hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16930.1.S1_at--240--8271Chr08:5755444..5755655 (25 bp)
GGCATAGCACGTGCCACAAGCTCAT
LOC_Os08g09970
OsAffx.16930.1.S1_at--710--291NONE
ATAGCACGTGCCACAAGCTCATCGG
NONE
OsAffx.16930.1.S1_at--97--1511NONE
AGCACGTGCCACAAGCTCATCGGTG
NONE
OsAffx.16930.1.S1_at--1068--2691Chr08:5755648..5755672 (25 bp)
AAGCTCATCGGTGATGCGTCCGCGC
LOC_Os08g09970
OsAffx.16930.1.S1_at--653--4811Chr08:5755650..5755674 (25 bp)
GCTCATCGGTGATGCGTCCGCGCTG
LOC_Os08g09970
OsAffx.16930.1.S1_at--39--511Chr08:5755654..5755678 (25 bp)
ATCGGTGATGCGTCCGCGCTGCCCT
LOC_Os08g09970
OsAffx.16930.1.S1_at--451--1591Chr08:5755683..5755707 (25 bp)
AGCTCGGCCCTATCTCTGCTGTCAC
LOC_Os08g09970
OsAffx.16930.1.S1_at--274--9131Chr08:5755699..5755723 (25 bp)
TGCTGTCACCAGCCGCACGATGCGT
LOC_Os08g09970
OsAffx.16930.1.S1_at--421--611Chr08:5755718..5755742 (25 bp)
ATGCGTCACCACTACCGACAACCTC
LOC_Os08g09970
OsAffx.16930.1.S1_at--873--1811Chr08:5755770..5755794 (25 bp)
ACCCTTGCCGCTTAGGTGCTAGTGA
LOC_Os08g09970
OsAffx.16930.1.S1_at--664--10691Chr08:5755774..5755798 (25 bp)
TTGCCGCTTAGGTGCTAGTGAGGCC
LOC_Os08g09970
Target Sequence 
GGCATAGCACGTGCCACAAGCTCATCGGTGATGCGTCCGCGCTGCCCTGCTCAGCTCGGCCCTATCTCTGCTGTCACCAG
CCGCACGATGCGTCACCACTACCGACAACCTCGGCCCAAGACACTACCACCACCAGCTCACCCTTGCCGCTTAGGTGCTA
GTGAGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis