Browse Element(s) Details


OsAffx.19106.1.S1_at

Description tigr:9639.m02873
TID=OsAffx.19106.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3163010/11hypothetical protein
LOC_Os08g099901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31610OsAffx.31249.1.S1_at1/1111+17971210..17971569hypothetical protein
LOC_Os11g31620Os.24828.1.S1_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.24828.1.S2_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.22714.1.A1_at1/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31630OsAffx.19106.1.S1_at10/1111+17993146..17995156hypothetical protein
LOC_Os11g31630Os.38320.2.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31630OsAffx.16931.1.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31640Os.7816.1.S1_at11/1111+18000817..18005033Serine palmitoyltransferase 2, putative, expressed
LOC_Os11g31650Os.5713.1.S1_at4/1111+18007057..18009546hypothetical protein
LOC_Os11g31660OsAffx.31250.1.S1_at11/1111+18013325..18018148expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19106.1.S1_at--1022--4611Chr11:17994992..17995016 (25 bp)
GCGAGGTACCTCGAGTCCCAAGACA
LOC_Os11g31630
OsAffx.19106.1.S1_at--1128--7231Chr11:17994978..17995002 (25 bp)
GTCCCAAGACACTCGAGAAGCGCCG
LOC_Os11g31630
OsAffx.19106.1.S1_at--724--5411Chr11:17994766..17994894 (25 bp)
GAAGCGGCAAGCACTCAGATGGAAT
LOC_Os11g31630
OsAffx.19106.1.S1_at--222--1311Chr11:17994750..17994774 (25 bp)
AGATGGAATCGCACCACAGTACCTC
LOC_Os11g31630
OsAffx.19106.1.S1_at--1073--7511Chr11:17994450..17994708 (25 bp)
GTGGCACTCCGGGTTTCAATACGGA
LOC_Os11g31630
OsAffx.19106.1.S1_at--906--8131Chr11:17994423..17994447 (25 bp)
GGACAAAGTGTTCCAGCCATTGCCA
LOC_Os11g31630
OsAffx.19106.1.S1_at--1033--7132Chr11:17994325..17994345 (21 bp)
GTCATTGCCTTCCACGGGACAATCT
LOC_Os11g31630
OsAffx.19106.1.S1_at--687--1911Chr11:17994106..17994332 (25 bp)
ACGGGACAATCTGCATTTCCATCCG
LOC_Os11g31630
OsAffx.19106.1.S1_at--245--1591NONE
AGCTCTTCATCTGTATACTCATATC
NONE
OsAffx.19106.1.S1_at--1013--5531Chr11:17993224..17993248 (25 bp)
GAAACGTTTCTCTCTATTCAGGAAG
LOC_Os11g31630
OsAffx.19106.1.S1_at--502--751Chr11:17993184..17993208 (25 bp)
ATGTATGCGCCTTCTTTGCTAAACT
LOC_Os11g31630
Target Sequence 
GCGAGGTACCTCGAGTCCCAAGACACTCGAGAAGCGCCGCACGCTCCCCGTGTGGCAGCTGAAGGACGATTTCCTCGCTG
TCCTCCACGACAACCAGGCCCTCATCCTCGTCGGAGAAACCGGAAGCGGCAAGCACTCAGATGGAATCGCACCACAGTAC
CTCGACCCCCAAATCCATCGATCCGCCGCCATCGGTTCAGGGGAGTGGCACTCCGGGTTTCAATACGGAGTGGACAAAGT
GTTCCAGCCATTGCCATCGTCGCCTTCCATGGGGCATGAGCTCCTCTGTTGGGGTTCAGTACTGAGTGGAGAAAGTGTGT
TCCGGCCACTGCCGTCATTGCCTTCCACGGGACAATCTGCATTTCCATCCGCAACAGCTCTTCATCTGTATACTCATATC
ACATTGAAGCCAAGTTATGCTATGTATTACGTTGATTTGGTCATGAAACGTTTCTCTCTATTCAGGAAGCATTTTTATTC
AACAATGTATGCGCCTTCTTTGCTAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis