Browse Element(s) Details


OsAffx.31249.1.S1_at

Description tigr:9639.m02871
TID=OsAffx.31249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g316101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31570Os.7793.1.S1_at11/1111+17945573..17949064expressed protein
LOC_Os11g31579Os.50826.1.S1_at10/1111+17961041..17961332NA
LOC_Os11g31590OsAffx.31248.2.S1_x_at11/1111+17961499..17962926Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g31600OsAffx.7267.1.S1_at10/1111+17967083..17967746hypothetical protein
LOC_Os11g31600OsAffx.7680.1.S1_at1/1111+17967083..17967746hypothetical protein
LOC_Os11g31610OsAffx.31249.1.S1_at1/1111+17971210..17971569hypothetical protein
LOC_Os11g31620Os.24828.1.S1_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.24828.1.S2_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.22714.1.A1_at1/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31630OsAffx.19106.1.S1_at10/1111+17993146..17995156hypothetical protein
LOC_Os11g31630Os.38320.2.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31630OsAffx.16931.1.S1_at1/1111+17993146..17995156hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31249.1.S1_at--259--7611Chr11:17971371..17971395 (25 bp)
GGGAATGGCGTCCTTGGCCCCACCA
LOC_Os11g31610
OsAffx.31249.1.S1_at--293--3931NONE
CGGCCGGGAGAATATCCGCTGGATT
NONE
OsAffx.31249.1.S1_at--406--251NONE
ATATCCGCTGGATTCTAGTGAAATT
NONE
OsAffx.31249.1.S1_at--302--5591Chr11:17970251..17970275 (25 bp)
GAAATCATGTGATAAGCAATTGTCA
NONE
OsAffx.31249.1.S1_at--1073--1471Chr11:17969880..17970261 (25 bp)
AGCAATTGTCAAAAGCTTGGGAGAA
NONE
OsAffx.31249.1.S1_at--686--4351Chr11:17969847..17969871 (25 bp)
CCAGACGGTTAAGGAGATCATGCGT
NONE
OsAffx.31249.1.S1_at--856--3731Chr11:17969818..17969842 (25 bp)
CTAAGGCTAGAGAACGATGCATATG
NONE
OsAffx.31249.1.S1_at--477--7771Chr11:17969791..17969815 (25 bp)
GGTGAAGGTTTCTATATGACATTAC
NONE
OsAffx.31249.1.S1_at--579--8951Chr11:17969775..17969799 (25 bp)
TGACATTACGTGGTGTTGTGTGCAT
NONE
OsAffx.31249.1.S1_at--296--7471Chr11:17969758..17969782 (25 bp)
GTGTGCATGTGGAAAAAGGAGTCAA
NONE
OsAffx.31249.1.S1_at--523--8132Chr02:25795950..25796105 (25 bp)
TGGATTGGAGTTCAAGTTTAGGAAT
NONE
Target Sequence 
GGGAATGGCGTCCTTGGCCCCACCACGGCCGGACCCGTGCCCCCCGACGATGACGAGGAGGAGGAGGCGGCAGGCGGGCA
GTGGCGCCGCCAGCCCCACGCGCACGCGCGCTGGGCGGATCTGCGCGGCGCTCGCCGCCGGCAAGGGAGGAGGAGGCGCG
GCCGGGAGAATATCCGCTGGATTCTAGTGAAATTTCCAAATTATAAAATAGATTTTTGTCATGGAGAAATTGTGAAATCA
TGTGATAAGCAATTGTCAAAAGCTTGGGAGAAGTTGAGATCCAGACGGTTAAGGAGATCATGCGTGATACTAAGGCTAGA
GAACGATGCATATGAAGGTGAAGGTTTCTATATGACATTACGTGGTGTTGTGTGCATGTGGAAAAAGGAGTCAAATTTGG
ATTGGAGTTCAAGTTTAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis