Browse Element(s) Details


Os.7793.1.S1_at

Description gb:AK064017.1
DB_XREF= gi:32974035
TID=Os.7793.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H08, full insert sequence.
FL= gb:AK099379.1 gb:AK064017.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3157011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31530OsAffx.19103.1.S1_at10/1111+17923442..17925472BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative
LOC_Os11g31540OsAffx.19104.1.S1_at11/1111+17927946..17929837BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os11g31550OsAffx.31247.1.S1_at10/1111+17932830..17935422Leucine Rich Repeat family protein
LOC_Os11g31560OsAffx.19105.1.S1_at11/1111+17940840..17942929Leucine Rich Repeat family protein
LOC_Os11g31570Os.7793.1.S1_at11/1111+17945573..17949064expressed protein
LOC_Os11g31579Os.50826.1.S1_at10/1111+17961041..17961332NA
LOC_Os11g31590OsAffx.31248.2.S1_x_at11/1111+17961499..17962926Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g31600OsAffx.7267.1.S1_at10/1111+17967083..17967746hypothetical protein
LOC_Os11g31600OsAffx.7680.1.S1_at1/1111+17967083..17967746hypothetical protein
LOC_Os11g31610OsAffx.31249.1.S1_at1/1111+17971210..17971569hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7793.1.S1_at--602--1511Chr11:17946420..17946444 (25 bp)
AGCAGCCACATCAGTGCAGTGTGCT
LOC_Os11g31570
Os.7793.1.S1_at--468--9191Chr11:17946396..17946420 (25 bp)
TGCCTCTCTGCAGCTGATGATCTAG
LOC_Os11g31570
Os.7793.1.S1_at--981--1331Chr11:17946359..17946383 (25 bp)
AGAGGGCTTGTTTGAGCTTCTGCTT
LOC_Os11g31570
Os.7793.1.S1_at--830--9811Chr11:17945941..17945962 (22 bp)
TAACAGTGCACTTCAATCCTTACCA
LOC_Os11g31570
Os.7793.1.S1_at--521--10511Chr11:17945930..17945954 (25 bp)
TTCAATCCTTACCAGATCTACCAGA
LOC_Os11g31570
Os.7793.1.S1_at--757--591Chr11:17945889..17945913 (25 bp)
AGACCCGAAGGGTATGAACTGCCTA
LOC_Os11g31570
Os.7793.1.S1_at--497--2552Chr11:17945873..17945897 (25 bp)
AACTGCCTAGCACTGATTCAATCTG
LOC_Os11g31570
Os.7793.1.S1_at--80--6471Chr11:17945847..17945871 (25 bp)
GATAATGTTGATAGCCAGCCTCAGA
LOC_Os11g31570
Os.7793.1.S1_at--47--3391Chr11:17945832..17945856 (25 bp)
CAGCCTCAGATTCAGAGCCTCAAGG
LOC_Os11g31570
Os.7793.1.S1_at--289--2431Chr11:17945755..17945779 (25 bp)
AAAACGCTTCATTTCATTGTGCCAT
LOC_Os11g31570
Os.7793.1.S1_at--623--5231Chr11:17945639..17945663 (25 bp)
GAATATGTACCTTCTGTGTAGTTGA
LOC_Os11g31570
Target Sequence 
AGCAGCCACATCAGTGCAGTGTGCTGCCTCTCTGCAGCTGATGATCTAGTTGCAGATAGCNAAGAGGGCTTGTTTGAGCT
TCTGCTTGGCAAACCCCATCACAAGGGTACCTCCTCCTTGGGGTATCATGAGGAATATGCACAAGAAAANTCCCAGATTC
TGCGTGCAAGAGATTCCAAATGTATGGATATCTTTTTGAACAAGACAATAACAGTGCACTTCAATCCTTACCAGATCTAC
CAGAATTTGNNCTGTCGCTGAGACCCGAAGGGTATGAACTGCCTAGCACTGATTCAATCTGGGATAATGTTGATAGCCAG
CCTCAGATTCAGAGCCTCAAGGAGCATCTGGATGATGAAGACGAAGTGGAAACAAAATGATACTTCAGACATCCAAAACG
CTTCATTTCATTGTGCCATGAAAAGTAGCATTAGTACTAGCAAAGACATCGGAATGCTCAATTCAGAAGTGTTTGGATTC
AGCATATGGCATTGAGCCAAAAAGAAATCAGAATATGTACCTTCTGTGTAGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis