Browse Element(s) Details


Os.50826.1.S1_at

Description gb:AK058818.1
DB_XREF= gi:32968836
TID=Os.50826.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G03, full insert sequence.
FL= gb:AK058818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3157910/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31560OsAffx.19105.1.S1_at11/1111+17940840..17942929Leucine Rich Repeat family protein
LOC_Os11g31570Os.7793.1.S1_at11/1111+17945573..17949064expressed protein
LOC_Os11g31579Os.50826.1.S1_at10/1111+17961041..17961332NA
LOC_Os11g31590OsAffx.31248.2.S1_x_at11/1111+17961499..17962926Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g31600OsAffx.7267.1.S1_at10/1111+17967083..17967746hypothetical protein
LOC_Os11g31600OsAffx.7680.1.S1_at1/1111+17967083..17967746hypothetical protein
LOC_Os11g31610OsAffx.31249.1.S1_at1/1111+17971210..17971569hypothetical protein
LOC_Os11g31620Os.24828.1.S1_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.24828.1.S2_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.22714.1.A1_at1/1111+17982586..17988121F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50826.1.S1_at--1160--1111Chr11:17961271..17961295 (25 bp)
AGTGCTAGATGATGCGTGGTTTTTA
LOC_Os11g31579
Os.50826.1.S1_at--589--9131Chr11:17961259..17961283 (25 bp)
TGCGTGGTTTTTAGTGTGATCAAAT
LOC_Os11g31579
Os.50826.1.S1_at--674--2751Chr11:17961193..17961217 (25 bp)
AAGAAATTGAGCTTCGTTTGCCGAT
LOC_Os11g31579
Os.50826.1.S1_at--322--10631Chr11:17961181..17961205 (25 bp)
TTCGTTTGCCGATGCGCATTACTGT
LOC_Os11g31579
Os.50826.1.S1_at--869--9151Chr11:17961169..17961193 (25 bp)
TGCGCATTACTGTTGCTTGTCAAAT
LOC_Os11g31579
Os.50826.1.S1_at--765--7091Chr11:17961151..17961175 (25 bp)
GTCAAATTATCTTGTGTTGTTCATT
LOC_Os11g31579
Os.50826.1.S1_at--1060--8771Chr11:17961112..17961136 (25 bp)
TGTTTTTCTTCAGGGTATATGCAAT
LOC_Os11g31579
Os.50826.1.S1_at--860--5191Chr11:17961092..17961116 (25 bp)
GCAATTATGCATCTAATGTCATTTC
LOC_Os11g31579
Os.50826.1.S1_at--640--9531Chr11:17961081..17961105 (25 bp)
TCTAATGTCATTTCATAGGTACTAT
LOC_Os11g31579
Os.50826.1.S1_at--294--8971Chr11:17961044..17961068 (25 bp)
TGAAATGGATACAACACCGACAATT
LOC_Os11g31579
Os.50826.1.S1_at--1087--2451Chr11:17961032..17961056 (25 bp)
AACACCGACAATTGCATCATTATTC
NONE
Target Sequence 
AGTGCTAGATGATGCGTGGTTTTTAGTGTGATCAAATAAGAACATGGAAAAAGATCTTGTAATTTAATCTTTGATCTGAA
GAAATTGAGCTTCGTTTGCCGATGCGCATTACTGTTGCTTGTCAAATTATCTTGTGTTGTTCATTTGGCCTGATGGTTTT
GTTTTTCTTCAGGGTATATGCAATTATGCATCTAATGTCATTTCATAGGTACTATAATTGTATTGGTTGAAATGGATACA
ACACCGACAATTGCATCATTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis