Browse Element(s) Details


Os.22714.1.A1_at

Description gb:AK074013.1
DB_XREF= gi:32984036
TID=Os.22714.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074P14, full insert sequence.
FL= gb:AK074013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3846011/11expressed protein
LOC_Os11g316201/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38400Os.11698.1.S1_at11/117+23079520..23083460Major Facilitator Superfamily protein, expressed
LOC_Os07g38410NANA7+23084892..23085416hypothetical protein
LOC_Os07g38420Os.8050.1.S1_at11/117+23086238..23089224Prp18 domain containing protein, expressed
LOC_Os07g38430Os.24649.1.S1_at11/117+23090196..23092725Will die slowly protein, putative, expressed
LOC_Os07g38440Os.53714.1.S1_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.16614.1.S1_x_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440Os.11835.3.S1_x_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.12860.1.S1_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38450NANA7+23099456..23103668retrotransposon protein, putative, unclassified
LOC_Os07g38460Os.22714.1.A1_at11/117+23104667..23106449expressed protein
LOC_Os07g38470Os.52469.1.S1_at1/117+23108774..23109097hypothetical protein
LOC_Os07g38480Os.15805.1.S1_at11/117+23110477..23112224expressed protein
LOC_Os07g38490Os.48830.1.S1_at11/117+23114152..23118126GDP-fucose protein-O-fucosyltransferase 2, putative, expressed
LOC_Os07g38500NANA7+23131297..23137267retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0045014biological_processnegative regulation of transcription by glucose
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22714.1.A1_at--1144--10311Chr07:23106061..23106085 (25 bp)
TTTCAGTCAGGCCAATCCATGGAAA
LOC_Os07g38460
Os.22714.1.A1_at--191--7091Chr07:23106093..23106117 (25 bp)
GTCAAGGTCATGCTCTCAGAATGAA
LOC_Os07g38460
Os.22714.1.A1_at--581--2311Chr07:23106117..23106141 (25 bp)
AAAGGAGCTTCAAGCGCATCGTTTT
LOC_Os07g38460
Os.22714.1.A1_at--473--4951Chr07:23106132..23106156 (25 bp)
GCATCGTTTTGGCTTCACTTTGATA
LOC_Os07g38460
Os.22714.1.A1_at--1042--8291Chr07:23106142..23106166 (25 bp)
GGCTTCACTTTGATACTTAATGCAT
LOC_Os07g38460
Os.22714.1.A1_at--579--6471Chr07:23106153..23106177 (25 bp)
GATACTTAATGCATGGAAGACCGAA
LOC_Os07g38460
Os.22714.1.A1_at--97--10331Chr07:23106200..23106224 (25 bp)
TTTCTTCGGCCATTCTACCGTAAAT
LOC_Os07g38460
Os.22714.1.A1_at--83--2672Chr07:23106252..23106276 (25 bp)
AAGCCTGACAAAACCTTGTGCAAGG
LOC_Os07g38460
Os.22714.1.A1_at--522--5172Chr07:23106316..23106340 (25 bp)
GCAAGTTGAGAATTTGAGTACCCAT
LOC_Os07g38460
Os.22714.1.A1_at--952--111Chr07:23106379..23106403 (25 bp)
ATTCTAGTGCCCCATTTGTATTATC
LOC_Os07g38460
Os.22714.1.A1_at--80--7291Chr07:23106385..23106409 (25 bp)
GTGCCCCATTTGTATTATCATGTCT
LOC_Os07g38460
Target Sequence 
TTTCAGTCAGGCCAATCCATGGAAAAATTGCNGTCAAGGTCATGCTCTCAGAATGAAAAGGAGCTTCAAGCGCATCGTTT
TGGCTTCACTTTGATACTTAATGCATGGAAGACCGAATAGGCAGAAACATGATGNCAAGTTTCTTCGGCCATTCTACCGT
AAATTAATGAATCCTAACAGTAAGAATATGCAAGCCTGACAAAACCTTGTGCAAGGATTTCATGCTTNTTAACTATTGTG
TTCTAGTGATGATTAGCAAGTTGAGAATTTGAGTACCCATATAATTTTTTCTAGATAGGTAGTTAGACAGAATGTCANGA
TTCTAGTGCCCCATTTGTATTATCATGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22714.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis