Browse Element(s) Details


OsAffx.16614.1.S1_x_at

Description tigr:9635.m03828
TID=OsAffx.16614.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161533 copper amine oxidase like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3844011/11transposon protein, putative, unclassified, expressed
LOC_Os06g231141/11Copper amine oxidase, enzyme domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38380OsAffx.27508.54.S1_s_at11/117+23068033..23072824transmembrane protein 49, putative, expressed
LOC_Os07g38390OsAffx.16613.1.S1_at10/117+23074904..23077019chalcone isomerase, putative, expressed
LOC_Os07g38400Os.11698.1.S1_at11/117+23079520..23083460Major Facilitator Superfamily protein, expressed
LOC_Os07g38410NANA7+23084892..23085416hypothetical protein
LOC_Os07g38420Os.8050.1.S1_at11/117+23086238..23089224Prp18 domain containing protein, expressed
LOC_Os07g38430Os.24649.1.S1_at11/117+23090196..23092725Will die slowly protein, putative, expressed
LOC_Os07g38440Os.53714.1.S1_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.16614.1.S1_x_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440Os.11835.3.S1_x_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.12860.1.S1_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38450NANA7+23099456..23103668retrotransposon protein, putative, unclassified
LOC_Os07g38460Os.22714.1.A1_at11/117+23104667..23106449expressed protein
LOC_Os07g38470Os.52469.1.S1_at1/117+23108774..23109097hypothetical protein
LOC_Os07g38480Os.15805.1.S1_at11/117+23110477..23112224expressed protein
LOC_Os07g38490Os.48830.1.S1_at11/117+23114152..23118126GDP-fucose protein-O-fucosyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0005507molecular_functioncopper ion binding
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16614.1.S1_x_at--856--3411Chr07:23097915..23097939 (25 bp)
CAGACACGCCGAGGCGGAGCTACTG
LOC_Os07g38440
OsAffx.16614.1.S1_x_at--195--4431Chr07:23098007..23098031 (25 bp)
GCCGACCTGGTGTTCGTCAACCCGG
LOC_Os07g38440
OsAffx.16614.1.S1_x_at--1045--8451Chr07:23098104..23098128 (25 bp)
TGGCCGACGACGACTTCCCGCAGAG
LOC_Os07g38440
OsAffx.16614.1.S1_x_at--275--4571Chr07:23098129..23098153 (25 bp)
GCGCGCCGCCTACTGCAAGAAGCAG
LOC_Os07g38440
OsAffx.16614.1.S1_x_at--551--8931Chr07:23098161..23098185 (25 bp)
TGACGCCGTACAGCAGGTCGGAGAA
LOC_Os07g38440
OsAffx.16614.1.S1_x_at--1141--8331Chr07:23098197..23098221 (25 bp)
GGCTGTACGCCGACCAGAGCACCGG
LOC_Os07g38440
OsAffx.16614.1.S1_x_at--185--4631Chr07:23098269..23098293 (25 bp)
GCGAGGACATCGTGCTGTGGTACAC
LOC_Os07g38440
OsAffx.16614.1.S1_x_at--809--9971Chr07:23098316..23098340 (25 bp)
TACCAGGAGGACTTCCCGGTGATGC
LOC_Os07g38440
OsAffx.16614.1.S1_x_at--760--7252Chr07:23098372..23098396 (25 bp)
GTCCAACTTCTTCGAGAGGAACCCG
LOC_Os07g38440
OsAffx.16614.1.S1_x_at--297--1331Chr07:23098386..23098410 (25 bp)
AGAGGAACCCGCTGTTGACGACGAT
LOC_Os07g38440
OsAffx.16614.1.S1_x_at--634--6651Chr07:23098399..23098423 (25 bp)
GTTGACGACGATGCCGATCGGCCAT
LOC_Os07g38440
Target Sequence 
CAGACACGCCGAGGCGGAGCTACTGGACGGTGCGGCGGGAGGTGGCGGAGAGGGAGGCGGACGGGCAGGTGGACCTCGGC
GGCGGCGCCCCGGCCGACCTGGTGTTCGTCAACCCGGGGAAGAAGACGAGGATGGGGAACGAGGTCGGGTACCGCGTCGT
CCCCGGCGGCGCGATGGCGGCGTCGGTGCTGGCCGACGACGACTTCCCGCAGAGGCGCGCCGCCTACTGCAAGAAGCAGG
TGCGGGTGACGCCGTACAGCAGGTCGGAGAAGTGGGCGTCGGGGCTGTACGCCGACCAGAGCACCGGCGGCGACGGCCTC
GCTGCGTGGAGCGAGCGGGACAGGGCGATCCGCGGCGAGGACATCGTGCTGTGGTACACGGTGGGGCTGCACCACGTGCC
GTACCAGGAGGACTTCCCGGTGATGCCGACGCTGAGCGGCGGGCTCGAGCTCCGGCCGTCCAACTTCTTCGAGAGGAACC
CGCTGTTGACGACGATGCCGATCGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16614.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis