Browse Element(s) Details


Os.53714.1.S1_at

Description gb:AK099435.1
DB_XREF= gi:32984644
TID=Os.53714.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013014O02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013014O02, full insert sequence.
FL= gb:AK099435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3844011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38380OsAffx.27508.54.S1_s_at11/117+23068033..23072824transmembrane protein 49, putative, expressed
LOC_Os07g38390OsAffx.16613.1.S1_at10/117+23074904..23077019chalcone isomerase, putative, expressed
LOC_Os07g38400Os.11698.1.S1_at11/117+23079520..23083460Major Facilitator Superfamily protein, expressed
LOC_Os07g38410NANA7+23084892..23085416hypothetical protein
LOC_Os07g38420Os.8050.1.S1_at11/117+23086238..23089224Prp18 domain containing protein, expressed
LOC_Os07g38430Os.24649.1.S1_at11/117+23090196..23092725Will die slowly protein, putative, expressed
LOC_Os07g38440Os.53714.1.S1_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.16614.1.S1_x_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440Os.11835.3.S1_x_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.12860.1.S1_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38450NANA7+23099456..23103668retrotransposon protein, putative, unclassified
LOC_Os07g38460Os.22714.1.A1_at11/117+23104667..23106449expressed protein
LOC_Os07g38470Os.52469.1.S1_at1/117+23108774..23109097hypothetical protein
LOC_Os07g38480Os.15805.1.S1_at11/117+23110477..23112224expressed protein
LOC_Os07g38490Os.48830.1.S1_at11/117+23114152..23118126GDP-fucose protein-O-fucosyltransferase 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53714.1.S1_at--591--5691Chr07:23098476..23098500 (25 bp)
GACTATAGCTGCTTGCACGTGCAAC
LOC_Os07g38440
Os.53714.1.S1_at--871--3331Chr07:23098491..23098515 (25 bp)
CACGTGCAACGGACAACGGGTGCAA
LOC_Os07g38440
Os.53714.1.S1_at--889--9011Chr07:23098511..23098535 (25 bp)
TGCAAGTCGGATTGACACGCGCTGT
LOC_Os07g38440
Os.53714.1.S1_at--1008--10751Chr07:23098522..23098546 (25 bp)
TTGACACGCGCTGTGGCAAGTGAGT
LOC_Os07g38440
Os.53714.1.S1_at--477--5171Chr07:23098537..23098561 (25 bp)
GCAAGTGAGTAAGTGGCCAATTATT
LOC_Os07g38440
Os.53714.1.S1_at--517--1231Chr07:23098582..23098606 (25 bp)
AGTTCCATTGGACTTGGTAGACCTT
LOC_Os07g38440
Os.53714.1.S1_at--667--7851Chr07:23098597..23098621 (25 bp)
GGTAGACCTTGATTTCCTTTGAACT
LOC_Os07g38440
Os.53714.1.S1_at--991--10311Chr07:23098629..23098653 (25 bp)
TTTCAATTGAATTCGACTCGCAGTT
LOC_Os07g38440
Os.53714.1.S1_at--64--9371Chr07:23098641..23098665 (25 bp)
TCGACTCGCAGTTGGGTACTTGGGT
LOC_Os07g38440
Os.53714.1.S1_at--354--10811Chr07:23098660..23098684 (25 bp)
TTGGGTCGGCAATGAGATTTCTCGC
LOC_Os07g38440
Os.53714.1.S1_at--846--3091Chr07:23098702..23098726 (25 bp)
AATACTCTGGTAACTTACTCTCTCC
LOC_Os07g38440
Target Sequence 
GACTATAGCTGCTTGCACGTGCAACGGACAACGGGTGCAAGTCGGATTGACACGCGCTGTGGCAAGTGAGTAAGTGGCCA
ATTATTTATTGGGAACATCTTTTTGCAGTTCCATTGGACTTGGTAGACCTTGATTTCCTTTGAACTTGAGAAATTTCAAT
TGAATTCGACTCGCAGTTGGGTACTTGGGTCGGCAATGAGATTTCTCGCCGCCCATGCTTTACTCAAATACTCTGGTAAC
TTACTCTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis