Browse Element(s) Details


OsAffx.27508.54.S1_s_at

Description gb:AK105438.1
DB_XREF= gi:32990647
TID=OsAffx.27508.54
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H03, full insert sequence.
FL= gb:AK105438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3838011/11transmembrane protein 49, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38360Os.5961.2.S1_x_at11/117+23047756..23054053expressed protein
LOC_Os07g38360Os.5961.1.S1_at11/117+23047756..23054053expressed protein
LOC_Os07g38370Os.55105.1.S1_at10/117+23057106..23057901expressed protein
LOC_Os07g38380OsAffx.27508.54.S1_s_at11/117+23068033..23072824transmembrane protein 49, putative, expressed
LOC_Os07g38390OsAffx.16613.1.S1_at10/117+23074904..23077019chalcone isomerase, putative, expressed
LOC_Os07g38400Os.11698.1.S1_at11/117+23079520..23083460Major Facilitator Superfamily protein, expressed
LOC_Os07g38410NANA7+23084892..23085416hypothetical protein
LOC_Os07g38420Os.8050.1.S1_at11/117+23086238..23089224Prp18 domain containing protein, expressed
LOC_Os07g38430Os.24649.1.S1_at11/117+23090196..23092725Will die slowly protein, putative, expressed
LOC_Os07g38440Os.53714.1.S1_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.16614.1.S1_x_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440Os.11835.3.S1_x_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.12860.1.S1_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27508.54.S1_s_at--606--1771Chr07:23068594..23068618 (25 bp)
ACCGTGGTGTGGCTTTTGATCATGA
LOC_Os07g38380
OsAffx.27508.54.S1_s_at--840--8291Chr07:23068584..23068608 (25 bp)
GGCTTTTGATCATGAACTTCATCGT
LOC_Os07g38380
OsAffx.27508.54.S1_s_at--577--551Chr07:23068504..23068528 (25 bp)
ATCCGGAAGAAGTTGTCAGCGACGA
LOC_Os07g38380
OsAffx.27508.54.S1_s_at--536--3871Chr07:23068473..23068497 (25 bp)
CTGTTTCTGAAACTACTGGCTTATC
LOC_Os07g38380
OsAffx.27508.54.S1_s_at--558--2071Chr07:23068406..23068430 (25 bp)
ACATTCATGCCATCAATTTCTTCCC
LOC_Os07g38380
OsAffx.27508.54.S1_s_at--1064--171Chr07:23068391..23068415 (25 bp)
ATTTCTTCCCACACCTGAGGAGGAT
LOC_Os07g38380
OsAffx.27508.54.S1_s_at--710--4071Chr07:23068320..23068344 (25 bp)
CGAGCTGGAAAACCGGTATTCTTCA
LOC_Os07g38380
OsAffx.27508.54.S1_s_at--827--2051Chr07:23068232..23068256 (25 bp)
ACATTGTACATAACCTGTCCCATCA
LOC_Os07g38380
OsAffx.27508.54.S1_s_at--629--9871Chr07:23068201..23068225 (25 bp)
TACAGGAGAATTAGGGCCCCTGCAT
LOC_Os07g38380
OsAffx.27508.54.S1_s_at--708--4531Chr07:23068186..23068210 (25 bp)
GCCCCTGCATTATTGTGGAGCGCTA
LOC_Os07g38380
OsAffx.27508.54.S1_s_at--1005--5871Chr07:23068169..23068193 (25 bp)
GAGCGCTACTTATTGCTGTACTTAA
LOC_Os07g38380
Target Sequence 
ACCGTGGTGTGGCTTTTGATCATGAACTTCATCGTTCAGATAATTACTTCTACAGCACAAAGTTATCTCAAGAGACAACA
AGAGCTAGAGATCCGGAAGAAGTTGTCAGCGACGATACAAACTGTTTCTGAAACTACTGGCTTATCAAATTAATTCAGCC
AGATCATTCTTTCTAATATACAAATTTCACATTCATGCCATCAATTTCTTCCCACACCTGAGGAGGATACAATTGACTTG
GCAATTCCAAATATGGTTAATTTAGAAGTTACAACGAGCTGGAAAACCGGTATTCTTCAAGAATTTACATTGATATAGTT
GTCACATTGTACAGTCCTGCGCTTTCCAAAAAGAAAAAAAAAACATTGTACATAACCTGTCCCATCAAGCCATTACAGGA
GAATTAGGGCCCCTGCATTATTGTGGAGCGCTACTTATTGCTGTACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27508.54.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis