Browse Element(s) Details


Os.55105.1.S1_at

Description gb:AK107499.1
DB_XREF= gi:32992708
TID=Os.55105.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D11, full insert sequence.
FL= gb:AK107499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3837010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38340NANA7+23031751..23038417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g38350NANA7+23040610..23042901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g38360Os.5961.2.S1_x_at11/117+23047756..23054053expressed protein
LOC_Os07g38360Os.5961.1.S1_at11/117+23047756..23054053expressed protein
LOC_Os07g38370Os.55105.1.S1_at10/117+23057106..23057901expressed protein
LOC_Os07g38380OsAffx.27508.54.S1_s_at11/117+23068033..23072824transmembrane protein 49, putative, expressed
LOC_Os07g38390OsAffx.16613.1.S1_at10/117+23074904..23077019chalcone isomerase, putative, expressed
LOC_Os07g38400Os.11698.1.S1_at11/117+23079520..23083460Major Facilitator Superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55105.1.S1_at--909--6511Chr07:23057572..23057596 (25 bp)
GATTTGGCCGCCATTGCTGACTTGG
LOC_Os07g38370
Os.55105.1.S1_at--303--5691Chr07:23057554..23057578 (25 bp)
GACTTGGGTGTCAGCGAATTGCAAA
LOC_Os07g38370
Os.55105.1.S1_at--256--1091NONE
AGGGCTGGATCAAATGCTTCGGCAA
NONE
Os.55105.1.S1_at--736--4911Chr07:23057481..23057505 (25 bp)
GCTTCGGCAAAAGGCTGTGCTTCTT
LOC_Os07g38370
Os.55105.1.S1_at--88--10391Chr07:23057458..23057482 (25 bp)
TTTTCTTTTGTTCATCCTCCTTGGC
LOC_Os07g38370
Os.55105.1.S1_at--1090--5971Chr07:23057411..23057435 (25 bp)
GAGACCCGGCCTGCAAAATGGTACT
LOC_Os07g38370
Os.55105.1.S1_at--731--1991Chr07:23057376..23057400 (25 bp)
ACTCCTCCTCTGTGCTTAGCTTAAT
LOC_Os07g38370
Os.55105.1.S1_at--965--1551Chr07:23057359..23057383 (25 bp)
AGCTTAATCCTGATGCTGCTTCAAG
LOC_Os07g38370
Os.55105.1.S1_at--891--4751Chr07:23057345..23057369 (25 bp)
GCTGCTTCAAGTGCATCGCATTCAA
LOC_Os07g38370
Os.55105.1.S1_at--183--10851Chr07:23057235..23057259 (25 bp)
TTGGGTGTCTTACTTTTGCACTGAC
LOC_Os07g38370
Os.55105.1.S1_at--251--6971Chr07:23057169..23057193 (25 bp)
GGGCGGTGCACCAGTTGTAAAATGT
LOC_Os07g38370
Target Sequence 
GATTTGGCCGCCATTGCTGACTTGGGTGTCAGCGAATTGCAAAAGAGAAGCGGGGGGCGGCACGGATTTCGAGGTGAGGG
CTGGATCAAATGCTTCGGCAAAAGGCTGTGCTTCTTTTCTTTTGTTCATCCTCCTTGGCGTACTCCAAAGTTGATGTCAG
GGAGACCCGGCCTGCAAAATGGTACTGTACTCCAGTACTCCTCCTCTGTGCTTAGCTTAATCCTGATGCTGCTTCAAGTG
CATCGCATTCAAAGGTAGGAGTATTTTGGAGTTAAAATTGTTTTTTTTTTTTGTTCTCACAAGTGGATTTTCTACCTTTT
TACCTGGTGTGGTTCTCCTTGGGTGTCTTACTTTTGCACTGACAGTGTCTCAAATTCTACATGCATTTATTTTTTAAAAA
AGAAGGGCGGTGCACCAGTTGTAAAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis