Browse Element(s) Details


Os.11698.1.S1_at

Description gb:AK067178.1
DB_XREF= gi:32977196
TID=Os.11698.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098E20, full insert sequence.
FL= gb:AK067178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3840011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38370Os.55105.1.S1_at10/117+23057106..23057901expressed protein
LOC_Os07g38380OsAffx.27508.54.S1_s_at11/117+23068033..23072824transmembrane protein 49, putative, expressed
LOC_Os07g38390OsAffx.16613.1.S1_at10/117+23074904..23077019chalcone isomerase, putative, expressed
LOC_Os07g38400Os.11698.1.S1_at11/117+23079520..23083460Major Facilitator Superfamily protein, expressed
LOC_Os07g38410NANA7+23084892..23085416hypothetical protein
LOC_Os07g38420Os.8050.1.S1_at11/117+23086238..23089224Prp18 domain containing protein, expressed
LOC_Os07g38430Os.24649.1.S1_at11/117+23090196..23092725Will die slowly protein, putative, expressed
LOC_Os07g38440Os.53714.1.S1_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.16614.1.S1_x_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440Os.11835.3.S1_x_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.12860.1.S1_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38450NANA7+23099456..23103668retrotransposon protein, putative, unclassified
LOC_Os07g38460Os.22714.1.A1_at11/117+23104667..23106449expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11698.1.S1_at--245--4251Chr07:23080712..23080736 (25 bp)
CCGGACTTGCATCATGGGAGGCTTT
LOC_Os07g38400
Os.11698.1.S1_at--445--6211Chr07:23080695..23080719 (25 bp)
GAGGCTTTGCTGTTCTATACGTGTA
LOC_Os07g38400
Os.11698.1.S1_at--101--10171Chr07:23080685..23080704 (20 bp)
TATACGTGTATACCCCTGAGATCTA
LOC_Os07g38400
Os.11698.1.S1_at--1108--5231Chr07:23079976..23080000 (25 bp)
GAATCACATCTTCCTTTGGCCGGAT
LOC_Os07g38400
Os.11698.1.S1_at--68--1211Chr07:23079920..23079944 (25 bp)
AGTTTGTCAGAGAACTGCCGCCAGA
LOC_Os07g38400
Os.11698.1.S1_at--754--1111Chr07:23079888..23079912 (25 bp)
AGTGTTTTTCATGGACCTGATGCTC
LOC_Os07g38400
Os.11698.1.S1_at--35--6351Chr07:23079870..23079894 (25 bp)
GATGCTCTTTCTAGCAGCAGTGGCA
LOC_Os07g38400
Os.11698.1.S1_at--532--8271Chr07:23079800..23079824 (25 bp)
GGCAGTGATGCTTTCTTCAGTTTGA
LOC_Os07g38400
Os.11698.1.S1_at--623--10071Chr07:23079738..23079762 (25 bp)
TAGGGCATTCTTTCTTATCCAGCAC
LOC_Os07g38400
Os.11698.1.S1_at--676--1311Chr07:23079669..23079693 (25 bp)
AGATGTGTTCACCTTTCATGTGCAA
LOC_Os07g38400
Os.11698.1.S1_at--23--4871Chr07:23079614..23079638 (25 bp)
GCTAGCTCTCAATTCCATACAAGGG
LOC_Os07g38400
Target Sequence 
CCGGACTTGCATCATGGGAGGCTTTGCTGTTCTATACGTGTATACCCCTGAGATCTATCCTGCATCATCTCGCAACACGG
GGGTAGGAATCACATCTTCCTTTGGCCGGATTGGCAGTATAGTTTCACCTGTGGTGACTGTTAGTTTGTCAGAGAACTGC
CGCCAGAAAGAAGCAGTGTTTTTCATGGACCTGATGCTCTTTCTAGCAGCAGTGGCATGCGCCCTCATCCCTCTAGAGAC
CAAGGGCCGGCAAATCCNAGTGAGGCAGTGATGCTTTCTTCAGTTTGATGTACAGAATCACATTACATTTTGGTCAATTG
GAGACTAGGGCATTCTTTCTTATCCAGCACATATTTACACCTGCCAAAATTCACTGACATTTTGGATTCAACAAAGATGT
GTTCACCTTTCATGTGCAATTGCAGTGTTGCAACAACTGAAATGCACCAGCTAGCTCTCAATTCCATACAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis