Browse Element(s) Details


OsAffx.16613.1.S1_at

Description tigr:9635.m03823
TID=OsAffx.16613.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3839010/11chalcone isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38360Os.5961.2.S1_x_at11/117+23047756..23054053expressed protein
LOC_Os07g38360Os.5961.1.S1_at11/117+23047756..23054053expressed protein
LOC_Os07g38370Os.55105.1.S1_at10/117+23057106..23057901expressed protein
LOC_Os07g38380OsAffx.27508.54.S1_s_at11/117+23068033..23072824transmembrane protein 49, putative, expressed
LOC_Os07g38390OsAffx.16613.1.S1_at10/117+23074904..23077019chalcone isomerase, putative, expressed
LOC_Os07g38400Os.11698.1.S1_at11/117+23079520..23083460Major Facilitator Superfamily protein, expressed
LOC_Os07g38410NANA7+23084892..23085416hypothetical protein
LOC_Os07g38420Os.8050.1.S1_at11/117+23086238..23089224Prp18 domain containing protein, expressed
LOC_Os07g38430Os.24649.1.S1_at11/117+23090196..23092725Will die slowly protein, putative, expressed
LOC_Os07g38440Os.53714.1.S1_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.16614.1.S1_x_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440Os.11835.3.S1_x_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.12860.1.S1_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38450NANA7+23099456..23103668retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16613.1.S1_at--1156--1891Chr07:23076596..23076721 (25 bp)
ACGTCTACGCGTTTGGTGTGTATGC
LOC_Os07g38390
OsAffx.16613.1.S1_at--166--611Chr07:23076575..23076599 (25 bp)
ATGCGGATGACCACGATCTGAGACA
LOC_Os07g38390
OsAffx.16613.1.S1_at--675--5971Chr07:23076507..23076531 (25 bp)
GAGAACGCCGAGCTGATCAACGATG
LOC_Os07g38390
OsAffx.16613.1.S1_at--893--3251Chr07:23076490..23076514 (25 bp)
CAACGATGCGTTGGAGCGTGACATA
LOC_Os07g38390
OsAffx.16613.1.S1_at--118--8951Chr07:23076461..23076485 (25 bp)
TGACGGTCAGGCTCCAGATTGTGTA
LOC_Os07g38390
OsAffx.16613.1.S1_at--41--6171Chr07:23076433..23076457 (25 bp)
GAGGTTGAGCATTCGATCCGTGCGA
LOC_Os07g38390
OsAffx.16613.1.S1_at--894--6371Chr07:23076419..23076443 (25 bp)
GATCCGTGCGAAGCGCGTTCGAGAA
LOC_Os07g38390
OsAffx.16613.1.S1_at--872--7651Chr07:23076364..23076388 (25 bp)
GGGATCAGACACTCATGAGTTGCTT
LOC_Os07g38390
OsAffx.16613.1.S1_at--971--6051NONE
GAGTTGCTTCAGAGTTTCGTTTCAC
NONE
OsAffx.16613.1.S1_at--1086--3731Chr07:23075571..23075595 (25 bp)
CTCAAGGGAGTCGAGCCATGTGCTT
LOC_Os07g38390
OsAffx.16613.1.S1_at--616--5951Chr07:23074991..23075015 (25 bp)
GAGCAAGCTTTTGTGCAAGTCTATT
LOC_Os07g38390
Target Sequence 
ACGTCTACGCGTTTGGTGTGTATGCGGATGACCACGATCTGAGACAGCTGAGGGAGAAGTACCAGAAGCTCCCTGTCTCT
CAACTGAAGGAGAACGCCGAGCTGATCAACGATGCGTTGGAGCGTGACATACGGATGACGGTCAGGCTCCAGATTGTGTA
TGGGAGGTTGAGCATTCGATCCGTGCGAAGCGCGTTCGAGAAGAGCGTGGGAAGCAGGCTGCTGAAGTTTGGGGGATCAG
ACACTCATGAGTTGCTTCAGAGTTTCGTTTCACTTTTCAAGGATGAATACAAATTACCAAAGGGGTCCGTGATTGAGCTC
TCAAGGGAGTCGAGCCATGTGCTTAAAATAAGTATTGAAGGAGAAGAATTGGGGAGCATACAGAGCAAGCTTTTGTGCAA
GTCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis