Browse Element(s) Details


Os.5961.2.S1_x_at

Description gb:AK119301.1
DB_XREF= gi:37988924
TID=Os.5961.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-F01, full insert sequence.
FL= gb:AK119301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3836011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38330NANA7+23026464..23028260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g38340NANA7+23031751..23038417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g38350NANA7+23040610..23042901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g38360Os.5961.2.S1_x_at11/117+23047756..23054053expressed protein
LOC_Os07g38360Os.5961.1.S1_at11/117+23047756..23054053expressed protein
LOC_Os07g38370Os.55105.1.S1_at10/117+23057106..23057901expressed protein
LOC_Os07g38380OsAffx.27508.54.S1_s_at11/117+23068033..23072824transmembrane protein 49, putative, expressed
LOC_Os07g38390OsAffx.16613.1.S1_at10/117+23074904..23077019chalcone isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5961.2.S1_x_at--230--8911Chr07:23050186..23050210 (25 bp)
TGAGAATTGATCTTGCTTCCTCTCC
LOC_Os07g38360
Os.5961.2.S1_x_at--707--3471Chr07:23050114..23050138 (25 bp)
CAGGTGGCCTTGACTTTTCTTCATT
LOC_Os07g38360
Os.5961.2.S1_x_at--657--5431Chr07:23050083..23050107 (25 bp)
GAACCATCAACTATTCCAGAGCCAT
LOC_Os07g38360
Os.5961.2.S1_x_at--132--5011Chr07:23050044..23050068 (25 bp)
GCATGGTTATCCTCAGCTCAATTTT
LOC_Os07g38360
Os.5961.2.S1_x_at--1082--4571Chr07:23050013..23050037 (25 bp)
GCGCAATCTGTTCAAGCTGGTCAAC
LOC_Os07g38360
Os.5961.2.S1_x_at--759--7531Chr07:23049950..23049974 (25 bp)
GTGGCTGGTGATTCTTCAACGCATA
LOC_Os07g38360
Os.5961.2.S1_x_at--14--9831Chr07:23049837..23049861 (25 bp)
TAACAAGTCTTATGTGCCTCCTTTC
LOC_Os07g38360
Os.5961.2.S1_x_at--67--5091Chr07:23049781..23049805 (25 bp)
GCACCTTGAGCCTTATTGGGTCAGA
LOC_Os07g38360
Os.5961.2.S1_x_at--152--5431Chr07:23049758..23049782 (25 bp)
GAACCTTCAAATGCCTTCAGTCTAG
LOC_Os07g38360
Os.5961.2.S1_x_at--1085--2251Chr07:23049728..23049752 (25 bp)
AAATCAGCAAATACATCGGCCCCGG
LOC_Os07g38360
Os.5961.2.S1_x_at--641--1471Chr07:23049643..23049667 (25 bp)
AGCAGCAACAACATTTCCTTCAACT
LOC_Os07g38360
Target Sequence 
TGAGAATTGATCTTGCTTCCTCTCCCTCTTTTGTGGTTCCTTTTGGTTCTGTGGGTGCTCCTGGATCTGCCCCAGGTGGC
CTTGACTTTTCTTCATTGGGGCCGAACCATCAACTATTCCAGAGCCATCAAGAAGCAGGCAGGCATGGTTATCCTCAGCT
CAATTTTGCCACAGCGCAATCTGTTCAAGCTGGTCAACACAAGCCCCAGCGTCAGGTCAGTGGAGAAACAAAATCTGTGG
CTGGTGATTCTTCAACGCATAACACTGTTGACAGTGAGAGAAAGAAATCAGCAGCTGCAAAGTATCCAGGTGATTCACAG
CAGCATTCACTTTCCTTCTCCAGGCAAGATAACAAGTCTTATGTGCCTCCTTTCCTTAGTGGAAGCACTAATGATAGCTC
ATCCCGCACCTTGAGCCTTATTGGGTCAGAACCTTCAAATGCCTTCAGTCTAGGAGGCAAATCAGCAAATACATCGGCCC
CGGCAGCTACATCAGCGGCAGCACCATCCCCATCCAGCATTCCTCAGCAGCAGCAGCAGCAGCAGCAGCAACAACATTTC
CTTCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5961.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis