Browse Element(s) Details


Os.5961.1.S1_at

Description gb:AK099771.1
DB_XREF= gi:32984980
TID=Os.5961.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095D13, full insert sequence.
FL= gb:AK099771.1 gb:AK067380.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3836011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38330NANA7+23026464..23028260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g38340NANA7+23031751..23038417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g38350NANA7+23040610..23042901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g38360Os.5961.2.S1_x_at11/117+23047756..23054053expressed protein
LOC_Os07g38360Os.5961.1.S1_at11/117+23047756..23054053expressed protein
LOC_Os07g38370Os.55105.1.S1_at10/117+23057106..23057901expressed protein
LOC_Os07g38380OsAffx.27508.54.S1_s_at11/117+23068033..23072824transmembrane protein 49, putative, expressed
LOC_Os07g38390OsAffx.16613.1.S1_at10/117+23074904..23077019chalcone isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5961.1.S1_at--80--3111Chr07:23048332..23048356 (25 bp)
AATATGCGCGAACGGAGCTACGCCT
LOC_Os07g38360
Os.5961.1.S1_at--18--9951Chr07:23048314..23048338 (25 bp)
TACGCCTCTTGGACCCCAGAAGAAG
LOC_Os07g38360
Os.5961.1.S1_at--765--5171Chr07:23048265..23048289 (25 bp)
GCAAGAGCCTGTTTGCTGGCTGTTA
LOC_Os07g38360
Os.5961.1.S1_at--748--10711Chr07:23048253..23048277 (25 bp)
TTGCTGGCTGTTAATCGAAGAGGAC
LOC_Os07g38360
Os.5961.1.S1_at--1158--4531Chr07:23048223..23048247 (25 bp)
GCCCATTCCTTTGCTGGATCATTTG
LOC_Os07g38360
Os.5961.1.S1_at--666--1191Chr07:23048152..23048176 (25 bp)
AGTAGGTTATCCTCTCATGATGGAA
LOC_Os07g38360
Os.5961.1.S1_at--607--4711Chr07:23048126..23048150 (25 bp)
GCTGGAGGTGCATAGAATCTCTTTT
LOC_Os07g38360
Os.5961.1.S1_at--460--9051Chr07:23048090..23048114 (25 bp)
TGCATGGATGTCAAAAGCTGGTCTC
LOC_Os07g38360
Os.5961.1.S1_at--918--10251Chr07:23048030..23048054 (25 bp)
TTTGTTGTTCTCTTAACTGAAGCAA
LOC_Os07g38360
Os.5961.1.S1_at--834--8871Chr07:23047971..23047995 (25 bp)
TGATGTGGTGGTGTTCCTCTTTCCC
LOC_Os07g38360
Os.5961.1.S1_at--1048--671Chr07:23047831..23047855 (25 bp)
ATGACCTGCCTTTTCGGTTGTGTTG
LOC_Os07g38360
Target Sequence 
AATATGCGCGAACGGAGCTACGCCTCTTGGACCCCAGAAGAAGCAGATCGCAGCAACAGCCACAGGCGCAAGAGCCTGTT
TGCTGGCTGTTAATCGAAGAGGACGGCGCGCCCATTCCTTTGCTGGATCATTTGCTAACTGAAGTATTTGGAATGGTTGA
TGGGAGTGATACTTTTGTGTAGTAGGTTATCCTCTCATGATGGAAAGCTGGAGGTGCATAGAATCTCTTTTTAGCAGTTT
TATGCATGGATGTCAAAAGCTGGTCTCTTTCTCCCTCTCCCAACTGCTTTAGCTTTGTTCTTTTTGTTGTTCTCTTAACT
GAAGCAAAATTTAATTAGAATGCAGGACAAGGTAACTTTTGTGATGTGGTGGTGTTCCTCTTTCCCTCTATATTCCTCAC
CATTCTNTGCTTGGATTGTTTTAGCAATTGGGAGAAGAAACATATTATCCCATAGATGAGCCATGATTTGATTGGGTTGG
AGGGGGGTGGCATGGCATGGCATGACCTGCCTTTTCGGTTGTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis