Browse Element(s) Details


Os.8050.1.S1_at

Description gb:AK101604.1
DB_XREF= gi:32986813
TID=Os.8050.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051L15, full insert sequence.
FL= gb:AK101604.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3842011/11Prp18 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38380OsAffx.27508.54.S1_s_at11/117+23068033..23072824transmembrane protein 49, putative, expressed
LOC_Os07g38390OsAffx.16613.1.S1_at10/117+23074904..23077019chalcone isomerase, putative, expressed
LOC_Os07g38400Os.11698.1.S1_at11/117+23079520..23083460Major Facilitator Superfamily protein, expressed
LOC_Os07g38410NANA7+23084892..23085416hypothetical protein
LOC_Os07g38420Os.8050.1.S1_at11/117+23086238..23089224Prp18 domain containing protein, expressed
LOC_Os07g38430Os.24649.1.S1_at11/117+23090196..23092725Will die slowly protein, putative, expressed
LOC_Os07g38440Os.53714.1.S1_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.16614.1.S1_x_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440Os.11835.3.S1_x_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.12860.1.S1_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38450NANA7+23099456..23103668retrotransposon protein, putative, unclassified
LOC_Os07g38460Os.22714.1.A1_at11/117+23104667..23106449expressed protein
LOC_Os07g38470Os.52469.1.S1_at1/117+23108774..23109097hypothetical protein
LOC_Os07g38480Os.15805.1.S1_at11/117+23110477..23112224expressed protein
LOC_Os07g38490Os.48830.1.S1_at11/117+23114152..23118126GDP-fucose protein-O-fucosyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008380biological_processRNA splicing
GO:0005681cellular_componentspliceosome complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8050.1.S1_at--763--1011Chr07:23086791..23086815 (25 bp)
AGGTTCTTCCTGATGACATCCGTCA
LOC_Os07g38420
Os.8050.1.S1_at--75--3251Chr07:23086768..23086792 (25 bp)
CAAGCATTGCTCGTTATTGTTGAAT
LOC_Os07g38420
Os.8050.1.S1_at--629--8091Chr07:23086712..23086736 (25 bp)
GGACCAATACATCAAGCTGGCCATT
LOC_Os07g38420
Os.8050.1.S1_at--269--31Chr07:23086690..23086714 (25 bp)
ATTGGCAATGCACCATGGCCTATTG
LOC_Os07g38420
Os.8050.1.S1_at--870--871Chr07:23086676..23086700 (25 bp)
ATGGCCTATTGGTGTCACTATGGTT
LOC_Os07g38420
Os.8050.1.S1_at--971--8551Chr07:23086656..23086680 (25 bp)
TGGTTGGTATCCACGAGCGTTCGGC
LOC_Os07g38420
Os.8050.1.S1_at--56--7491Chr07:23086608..23086632 (25 bp)
GTGTGGCGCACATTATGAACGATGA
LOC_Os07g38420
Os.8050.1.S1_at--561--8891Chr07:23086586..23086610 (25 bp)
TGAGACCACTCGCAAGTACCTTCAG
LOC_Os07g38420
Os.8050.1.S1_at--813--6971Chr07:23086571..23086595 (25 bp)
GTACCTTCAGTCAATCAAGAGGCTT
LOC_Os07g38420
Os.8050.1.S1_at--346--9711Chr07:23086377..23086401 (25 bp)
TCAACGCACAAGCTTGGATCACAAA
LOC_Os07g38420
Os.8050.1.S1_at--623--3131Chr07:23086318..23086342 (25 bp)
AATTTTCCTGCTCTTATTTTCATTT
LOC_Os07g38420
Target Sequence 
AGGTTCTTCCTGATGACATCCGTCAAGCATTGCTCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATG
GACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGC
CCGAGAAAAGATNCTACACAAACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAG
AGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAG
TGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGT
CAAAAGAGTGATGCTTCAACGCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTT
CCTGCTCTTATTTTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis