Browse Element(s) Details


Os.24828.1.S1_at

Description gb:AK105629.1
DB_XREF= gi:32990838
TID=Os.24828.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-D04, full insert sequence.
FL= gb:AK105629.1 gb:AK072358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3162011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31579Os.50826.1.S1_at10/1111+17961041..17961332NA
LOC_Os11g31590OsAffx.31248.2.S1_x_at11/1111+17961499..17962926Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g31600OsAffx.7267.1.S1_at10/1111+17967083..17967746hypothetical protein
LOC_Os11g31600OsAffx.7680.1.S1_at1/1111+17967083..17967746hypothetical protein
LOC_Os11g31610OsAffx.31249.1.S1_at1/1111+17971210..17971569hypothetical protein
LOC_Os11g31620Os.24828.1.S1_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.24828.1.S2_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.22714.1.A1_at1/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31630OsAffx.19106.1.S1_at10/1111+17993146..17995156hypothetical protein
LOC_Os11g31630Os.38320.2.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31630OsAffx.16931.1.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31640Os.7816.1.S1_at11/1111+18000817..18005033Serine palmitoyltransferase 2, putative, expressed
LOC_Os11g31650Os.5713.1.S1_at4/1111+18007057..18009546hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0045014biological_processnegative regulation of transcription by glucose
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24828.1.S1_at--776--6031Chr11:17983931..17983955 (25 bp)
GAGATACCGACGATGGCATGACCTA
LOC_Os11g31620
Os.24828.1.S1_at--85--8931Chr11:17983913..17983937 (25 bp)
TGACCTACGTGCTCAATGGCTGCAA
LOC_Os11g31620
Os.24828.1.S1_at--80--7631Chr11:17983865..17983889 (25 bp)
GGGACAGTCCTTTTGGTGACAGCGC
LOC_Os11g31620
Os.24828.1.S1_at--990--8951Chr11:17983849..17983873 (25 bp)
TGACAGCGCGCTTCTTGCAGGCATG
LOC_Os11g31620
Os.24828.1.S1_at--1004--6191Chr11:17983815..17983839 (25 bp)
GAGGCAATGCGCTCACTCTGGTTGT
LOC_Os11g31620
Os.24828.1.S1_at--622--6631Chr11:17983795..17983819 (25 bp)
GTTGTCGTCGTGTAATGTCACCCTG
LOC_Os11g31620
Os.24828.1.S1_at--228--611Chr11:17983619..17983643 (25 bp)
ATGCGCCTGAATTCATCTCAACGTT
LOC_Os11g31620
Os.24828.1.S1_at--535--4851Chr11:17983525..17983549 (25 bp)
GCTACGTCGAGTTGATCTACATGTT
LOC_Os11g31620
Os.24828.1.S1_at--364--8751Chr11:17983449..17983473 (25 bp)
TGTAAATTCCTTTGCTATCACCTCT
LOC_Os11g31620
Os.24828.1.S1_at--802--4871Chr11:17983436..17983460 (25 bp)
GCTATCACCTCTGCTATGTCATTAT
LOC_Os11g31620
Os.24828.1.S1_at--16--771Chr11:17983421..17983445 (25 bp)
ATGTCATTATCTTCCAGCAGTGCTA
LOC_Os11g31620
Target Sequence 
GAGATACCGACGATGGCATGACCTACGTGCTCAATGGCTGCAAAAATCTCAAGAAGCTGGAAANCAGGGACAGTCCTTTT
GGTGACAGCGCGCTTCTTGCAGGCATGCATCAGTACGAGGCAATGCGCTCACTCTGGTTGTCGTCGTGTAATGTCACCCT
GGGGGGTTGCAAGTCTCTTGCAGCAAGCATGGCAANCCTCAACATCGAGGTCATGAATAGANCAGCAAGTATCAATGAGG
CAGACAATGCTNATGATGCAAAGAAGGTGAAGAAGTTGTATATTTACAGGACAGTTNNTGGACCGAGGGGTGATGCGCCT
GAATTCATCTCAACGTTNTAAATCCATATATTTTTGAAGTTGAAGGTTTGTTCTTCGACANCCACCTTTTNTNNATATCA
TACTCTGCTACGTCGAGTTGATCTACATGTTCTAAAGATCTATCTATCTTCNCGGTNGAAGGGATCTTCTAGGATTATTT
TGTGTAAATTCCTTTGCTATCACCTCTGCTATGTCATTATCTTCCAGCAGTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis