Browse Element(s) Details


Os.7816.1.S1_at

Description gb:AK069007.1
DB_XREF= gi:32979031
TID=Os.7816.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.7816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001A14, full insert sequence.
FL= gb:AK069007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3164011/11Serine palmitoyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31620Os.24828.1.S1_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.24828.1.S2_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.22714.1.A1_at1/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31630OsAffx.19106.1.S1_at10/1111+17993146..17995156hypothetical protein
LOC_Os11g31630Os.38320.2.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31630OsAffx.16931.1.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31640Os.7816.1.S1_at11/1111+18000817..18005033Serine palmitoyltransferase 2, putative, expressed
LOC_Os11g31650Os.5713.1.S1_at4/1111+18007057..18009546hypothetical protein
LOC_Os11g31660OsAffx.31250.1.S1_at11/1111+18013325..18018148expressed protein
LOC_Os11g31670NANA11+18020744..18022384hypothetical protein
LOC_Os11g31680Os.21278.1.S1_at11/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31680Os.10442.1.S2_at1/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030148biological_processsphingolipid biosynthesis
GO:0046512biological_processsphingosine biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0016020cellular_componentmembrane
GO:0004758molecular_functionserine C-palmitoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7816.1.S1_at--1117--671Chr11:18004210..18004234 (25 bp)
ATGACTCTCCAGTTATGCCAATAAT
LOC_Os11g31640
Os.7816.1.S1_at--311--571Chr11:18004243..18004267 (25 bp)
ATCCAGCCAAAATTCCAGCTTTTTC
LOC_Os11g31640
Os.7816.1.S1_at--838--4871Chr11:18004260..18004284 (25 bp)
GCTTTTTCCAGGGAGTGCCTTAGAC
LOC_Os11g31640
Os.7816.1.S1_at--777--5171Chr11:18004456..18004480 (25 bp)
GCAAGGGCGCGCATCTGCATTTCTG
LOC_Os11g31640
Os.7816.1.S1_at--1104--10591Chr11:18004476..18004500 (25 bp)
TTCTGCTTCGCACACTAGGGAGGAC
LOC_Os11g31640
Os.7816.1.S1_at--1115--2351Chr11:18004507..18004621 (25 bp)
AAAGCCCTTGATGTTATCAGCAGAG
LOC_Os11g31640
Os.7816.1.S1_at--523--8651Chr11:18004634..18004658 (25 bp)
TGGGCATCAAGTACTTCCCTGCGGA
LOC_Os11g31640
Os.7816.1.S1_at--516--9131Chr11:18004653..18004677 (25 bp)
TGCGGAGCCGCCAAAGATTGCTGAA
LOC_Os11g31640
Os.7816.1.S1_at--677--8631Chr11:18004711..18004735 (25 bp)
TGGGTTGCCCCATTGAATGCTCAAG
LOC_Os11g31640
Os.7816.1.S1_at--961--1371Chr11:18004819..18004843 (25 bp)
AGAGCCTGTCTCATTAGCTGACTAC
LOC_Os11g31640
Os.7816.1.S1_at--436--1611Chr11:18004834..18004858 (25 bp)
AGCTGACTACTGTTGGTTGTACAAT
LOC_Os11g31640
Target Sequence 
ATGACTCTCCAGTTATGCCAATAATGCTCTACAATCCAGCCAAAATTCCAGCTTTTTCCAGGGAGTGCCTTAGACANAAA
GGTTGCTGTTGTCACTGTGGCATTCCCTGCCACACCTCTGCTCCTTGCAAGGGCGCGCATCTGCATTTCTGCTTCGCACA
CTAGGGAGGACCTGATAAAAGCCCTTGATGTTATCAGCAGAGTTGGTGATCTTGTGGGCATCAAGTACTTCCCTGCGGAG
CCGCCAAAGATTGCTGAAGCTGATCACGATAAGCTGGAGTAAATGATGAACTGGGTTGCCCCATTGAATGCTCAAGTTGC
TGGAATCTTGTAAANCAAGGCGCATGTTGTTGATTGGTTTCNTCGGTTTGACTTGGGATTTTGTTGATACCTGAGAATCC
AGAGCCTGTCTCATTAGCTGACTACTGTTGGTTGTACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis