Browse Element(s) Details


Os.21278.1.S1_at

Description gb:AK069747.1
DB_XREF= gi:32979771
TID=Os.21278.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027A12, full insert sequence.
FL= gb:AK069747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3168011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31640Os.7816.1.S1_at11/1111+18000817..18005033Serine palmitoyltransferase 2, putative, expressed
LOC_Os11g31650Os.5713.1.S1_at4/1111+18007057..18009546hypothetical protein
LOC_Os11g31660OsAffx.31250.1.S1_at11/1111+18013325..18018148expressed protein
LOC_Os11g31670NANA11+18020744..18022384hypothetical protein
LOC_Os11g31680Os.21278.1.S1_at11/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31680Os.10442.1.S2_at1/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31690OsAffx.31252.1.S1_at11/1111+18042435..18047623expressed protein
LOC_Os11g31690OsAffx.2057.1.S1_x_at2/1111+18042435..18047623expressed protein
LOC_Os11g31690OsAffx.2057.1.S1_at2/1111+18042435..18047623expressed protein
LOC_Os11g31700Os.6148.1.S1_at11/1111+18049838..18053579expressed protein
LOC_Os11g31700OsAffx.19108.1.S1_x_at9/1111+18049838..18053579expressed protein
LOC_Os11g31700OsAffx.19108.1.S1_at2/1111+18049838..18053579expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21278.1.S1_at--175--1331Chr11:18030415..18030439 (25 bp)
AGAGAGTTTTTTCTGGGCATTCCCT
LOC_Os11g31680
Os.21278.1.S1_at--746--3591Chr11:18030398..18030422 (25 bp)
CATTCCCTTCCTAAGCATTACATGA
LOC_Os11g31680
Os.21278.1.S1_at--600--31Chr11:18030277..18030301 (25 bp)
ATTGTTGGTTAATCTTCACGCGGAA
LOC_Os11g31680
Os.21278.1.S1_at--694--6471Chr11:18029457..18029481 (25 bp)
GATACTATGAGCACCACTACTATGA
LOC_Os11g31680
Os.21278.1.S1_at--749--651Chr11:18029436..18029460 (25 bp)
ATGACATTGTTAGACGACCCTTGCA
LOC_Os11g31680
Os.21278.1.S1_at--336--10291Chr11:18029261..18029285 (25 bp)
TTTCCTCGTTTCTTCCATCAATAGA
LOC_Os11g31680
Os.21278.1.S1_at--568--1471Chr11:18029239..18029263 (25 bp)
AGAATCTCGCCGTTAGCAGCTAAAA
LOC_Os11g31680
Os.21278.1.S1_at--352--9831Chr11:18029219..18029243 (25 bp)
TAAAAAGTGAAGATCGCCCTGCAGA
LOC_Os11g31680
Os.21278.1.S1_at--617--531Chr11:18029207..18029231 (25 bp)
ATCGCCCTGCAGATGAGTGTAGCCT
LOC_Os11g31680
Os.21278.1.S1_at--558--1111Chr11:18029192..18029216 (25 bp)
AGTGTAGCCTGTCAAGGAGCCCTCA
LOC_Os11g31680
Os.21278.1.S1_at--374--494Chr04:3572167..3572220 (25 bp)
ATCGGCGCCTGATTTACGTGCAAAA
NONE
Target Sequence 
AGAGAGTTTTTTCTGGGCATTCCCTTCCTAAGCATTACATGATCAGAGGAATCATTGATTGTTGGTTAATCTTCACGCGG
AAGGGTAACTCTTGGCAAGATACTTTCGAAGAGGTGGTTGTTGAAGCATGTGAAAGGTGGACTGAAAATCGTGAGAAGAT
ACTATGAGCACCACTACTATGACATTGTTAGACGACCCTTGCAAGAGGTTTTTTCCTCGTTTCTTCCATCAATAGAATCT
CGCCGTTAGCAGCTAAAAAGTGAAGATCGCCCTGCAGATGAGTGTAGCCTGTCAAGGAGCCCTCACCAGGGCAACAATGC
CATATTTTGATATATATCCGGATGTGACTCCGGCTCGGGCGCCCGATGGGAGGAGGTTAAAATCGGCGCCTGATTTACGT
GCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis