Browse Element(s) Details


OsAffx.31252.1.S1_at

Description tigr:9639.m02879
TID=OsAffx.31252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3169011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31660OsAffx.31250.1.S1_at11/1111+18013325..18018148expressed protein
LOC_Os11g31670NANA11+18020744..18022384hypothetical protein
LOC_Os11g31680Os.21278.1.S1_at11/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31680Os.10442.1.S2_at1/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31690OsAffx.31252.1.S1_at11/1111+18042435..18047623expressed protein
LOC_Os11g31690OsAffx.2057.1.S1_x_at2/1111+18042435..18047623expressed protein
LOC_Os11g31690OsAffx.2057.1.S1_at2/1111+18042435..18047623expressed protein
LOC_Os11g31700Os.6148.1.S1_at11/1111+18049838..18053579expressed protein
LOC_Os11g31700OsAffx.19108.1.S1_x_at9/1111+18049838..18053579expressed protein
LOC_Os11g31700OsAffx.19108.1.S1_at2/1111+18049838..18053579expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31252.1.S1_at--3--5591Chr11:18044016..18044040 (25 bp)
GAAATGATTCGTACACTGCTGAGAT
LOC_Os11g31690
OsAffx.31252.1.S1_at--865--71Chr11:18042864..18042888 (25 bp)
ATTGCCCTCAATTTATTCATCTTGG
LOC_Os11g31690
OsAffx.31252.1.S1_at--370--2651Chr11:18042824..18042848 (25 bp)
AACCACAGGTTCCATCTGGAGATCC
LOC_Os11g31690
OsAffx.31252.1.S1_at--595--8991Chr11:18042757..18042781 (25 bp)
TGCTAGTTTACAATGGGCGAAGGCT
LOC_Os11g31690
OsAffx.31252.1.S1_at--1157--8371Chr11:18042742..18042766 (25 bp)
GGCGAAGGCTATGCCTCACTGGATA
LOC_Os11g31690
OsAffx.31252.1.S1_at--585--10171Chr11:18042702..18042726 (25 bp)
TATCAAGCACCAACCACAGAAACTG
LOC_Os11g31690
OsAffx.31252.1.S1_at--847--1951Chr11:18042681..18042705 (25 bp)
ACTGGTTTATCTTTCATTGATGGAC
LOC_Os11g31690
OsAffx.31252.1.S1_at--513--8111Chr11:18042660..18042684 (25 bp)
GGACTAAGAGACCTATTTGAGCATG
LOC_Os11g31690
OsAffx.31252.1.S1_at--36--1231Chr11:18042513..18042537 (25 bp)
AGTTGGTCGGGATCCAGATCTGGAA
LOC_Os11g31690
OsAffx.31252.1.S1_at--311--3891Chr11:18042494..18042518 (25 bp)
CTGGAATGTCAGCTTCGTTTAAATT
LOC_Os11g31690
OsAffx.31252.1.S1_at--609--5511Chr11:18042467..18042491 (25 bp)
GAAAAGATTTTTCTCCAAGCTCAAA
LOC_Os11g31690
Target Sequence 
GAAATGATTCGTACACTGCTGAGATTGAAGATCTGTGTAAGAAGTTAAAGAACAAAACTCTGAGAGGGATGAAAGTTCTT
AAACACAGTGCATTGTTGAATGTACGAGAAAAATTTGAGAACATAATTGCCCTCAATTTATTCATCTTGGTACATGTAAA
AAGTCAACCACAGGTTCCATCTGGAGATCCTGAAAAGGACAAGATCATTAGCGAACTGGTGAAATTCATGAATGCTAGTT
TACAATGGGCGAAGGCTATGCCTCACTGGATAACTCAAAGTTCTAATTATCAAGCACCAACCACAGAAACTGGTTTATCT
TTCATTGATGGACTAAGAGACCTATTTGAGCATGAAAACGAGTATATTCCAGAAAAGGTTAAACAATCCCAATCGAAAAT
CCAATTAGTTGGTCGGGATCCAGATCTGGAATGTCAGCTTCGTTTAAATTTGGAAAAGATTTTTCTCCAAGCTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis