Browse Element(s) Details


Os.6148.1.S1_at

Description gb:AK100272.1
DB_XREF= gi:32985481
TID=Os.6148.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072A06, full insert sequence.
FL= gb:AK100272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3170011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31680Os.21278.1.S1_at11/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31680Os.10442.1.S2_at1/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31690OsAffx.31252.1.S1_at11/1111+18042435..18047623expressed protein
LOC_Os11g31690OsAffx.2057.1.S1_x_at2/1111+18042435..18047623expressed protein
LOC_Os11g31690OsAffx.2057.1.S1_at2/1111+18042435..18047623expressed protein
LOC_Os11g31700Os.6148.1.S1_at11/1111+18049838..18053579expressed protein
LOC_Os11g31700OsAffx.19108.1.S1_x_at9/1111+18049838..18053579expressed protein
LOC_Os11g31700OsAffx.19108.1.S1_at2/1111+18049838..18053579expressed protein
LOC_Os11g31710OsAffx.7269.1.S1_at10/1111+18075583..18077140hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6148.1.S1_at--1053--9831Chr11:18052171..18052369 (25 bp)
TAAATACTCAGTTCCTTCAATGTGT
LOC_Os11g31700
Os.6148.1.S1_at--1157--9831Chr11:18051656..18051679 (24 bp)
TACAATGGTTGGGTGTTTTGAGGTT
LOC_Os11g31700
Os.6148.1.S1_at--1130--3591Chr11:18050023..18050047 (25 bp)
CATTGACAGTAGCAAGTACCCTCAT
LOC_Os11g31700
Os.6148.1.S1_at--466--271Chr11:18049982..18050006 (25 bp)
ATATGTGAGAAGTATGCACTTGCTA
LOC_Os11g31700
Os.6148.1.S1_at--921--6911Chr11:18049971..18049995 (25 bp)
GTATGCACTTGCTATGATTTCTAAT
LOC_Os11g31700
Os.6148.1.S1_at--889--351Chr11:18049948..18049972 (25 bp)
ATAATCAGCTTGTAGGGTTCCCCGT
LOC_Os11g31700
Os.6148.1.S1_at--404--9651Chr11:18049944..18049968 (25 bp)
TCAGCTTGTAGGGTTCCCCGTAAGG
LOC_Os11g31700
Os.6148.1.S1_at--1113--3251Chr11:18049905..18049929 (25 bp)
CAACTATTTTACATTTTAGCATCAA
LOC_Os11g31700
Os.6148.1.S1_at--1051--10431Chr11:18049890..18049914 (25 bp)
TTAGCATCAATTACTTCGGATCGAC
LOC_Os11g31700
Os.6148.1.S1_at--1083--9431Chr11:18049875..18049899 (25 bp)
TCGGATCGACTATTTTACCCCTATT
LOC_Os11g31700
Os.6148.1.S1_at--722--1791Chr11:18049859..18049883 (25 bp)
ACCCCTATTTTGATCTTCAATTTTG
LOC_Os11g31700
Target Sequence 
TAAATACTCAGTTCCTTCAATGTGTACATGCCCTCTGGAATCGAGATATTACTTATGATCTATCAAAAAAGTTTGCAAAA
GCTAAAAGACTTGGGATGAGGAGGAAGGTTTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGA
AAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGTTTGAAGATGAATTTGAAGATAT
CTTCCAGTTTATTTTGAGATGATGCAAGAAGTGGATACAATGGTTGGGTGTTTTGAGGTTGATTTTTTTGGACCGGGAAG
TTCTATATAAGAAATTGAGGCCTGAATTTAGATCCATGTATGCCATTGACAGTAGCAAGTACCCTCATCTAAGGATCATC
TCAAATATGTGAGAAGTATGCACTTGCTATGATTTCTAATAATCAGCTTGTAGGGTTCCCCGTAAGGAAAAAAGAGTACA
ACAACTATTTTACATTTTAGCATCAATTACTTCGGATCGACTATTTTACCCCTATTTTGATCTTCAATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis