Browse Element(s) Details


OsAffx.19108.1.S1_x_at

Description tigr:9639.m02880
TID=OsAffx.19108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g317009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31680Os.21278.1.S1_at11/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31680Os.10442.1.S2_at1/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31690OsAffx.31252.1.S1_at11/1111+18042435..18047623expressed protein
LOC_Os11g31690OsAffx.2057.1.S1_x_at2/1111+18042435..18047623expressed protein
LOC_Os11g31690OsAffx.2057.1.S1_at2/1111+18042435..18047623expressed protein
LOC_Os11g31700Os.6148.1.S1_at11/1111+18049838..18053579expressed protein
LOC_Os11g31700OsAffx.19108.1.S1_x_at9/1111+18049838..18053579expressed protein
LOC_Os11g31700OsAffx.19108.1.S1_at2/1111+18049838..18053579expressed protein
LOC_Os11g31710OsAffx.7269.1.S1_at10/1111+18075583..18077140hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19108.1.S1_x_at--944--5092Chr11:18066170..18066194 (25 bp)
GCACTGCAGTCGTAATGAGTTCTCC
NONE
OsAffx.19108.1.S1_x_at--2--8912Chr11:18053567..18053591 (25 bp)
TGAGTTCTCCTGATTGTGAATTAGA
NONE
OsAffx.19108.1.S1_x_at--67--6471Chr11:18053365..18053389 (25 bp)
GATAACATGCTGGATGCCGCAGACC
LOC_Os11g31700
OsAffx.19108.1.S1_x_at--483--4731Chr11:18052746..18052770 (25 bp)
GCTGTCTACTCCTTGCTGAGCATAA
LOC_Os11g31700
OsAffx.19108.1.S1_x_at--770--471Chr11:18052715..18052739 (25 bp)
ATCTGAAGCATTCCTTACTGCGTCA
LOC_Os11g31700
OsAffx.19108.1.S1_x_at--723--9911Chr11:18052700..18052724 (25 bp)
TACTGCGTCATCCTGGTCTAGATGT
LOC_Os11g31700
OsAffx.19108.1.S1_x_at--20--6752Chr11:18052541..18052565 (25 bp)
GTTCTTGTATACTCAGTCCTCTTAG
LOC_Os11g31700
OsAffx.19108.1.S1_x_at--102--5151Chr11:18052517..18052541 (25 bp)
GCAAAATTTGAACCCAGCCAGAGTG
LOC_Os11g31700
OsAffx.19108.1.S1_x_at--1095--2172Chr11:18052479..18052503 (25 bp)
ACACATTATGCATGGTGCCTCACAC
LOC_Os11g31700
OsAffx.19108.1.S1_x_at--512--9191Chr11:18052170..18052488 (25 bp)
TGCCTCACACTTCCTTCAATGTGTA
LOC_Os11g31700
OsAffx.19108.1.S1_x_at--940--9731Chr11:18052155..18052179 (25 bp)
TCAATGTGTACATGCCCTCTGGAAT
LOC_Os11g31700
Target Sequence 
GCACTGCAGTCGTAATGAGTTCTCCTGATTGTGAATTAGATCTCCTGTTATTGGGGAATGATGGGCATGACAATGATAGT
AGAGATAACATGCTGGATGCCGCAGACCCAAGAATGGGTAATGATGGAGCTAGACGAGCAAACTCTTTCCACCACTTGGG
CTGTCTACTCCTTGCTGAGCATAATATTATATCTGAAGCATTCCTTACTGCGTCATCCTGGTCTAGATGTGTCATCATGA
TTCAGCGATACAAGGAAGTTCTTGTATACTCAGTCCTCTTAGCAAAATTTGAACCCAGCCAGAGTGGGAAAGCAAATACA
CACATTATGCATGGTGCCTCACACTTCCTTCAATGTGTACATGCCCTCTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19108.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis