Browse Element(s) Details


OsAffx.2057.1.S1_at

Description gb:NM_183800.1
DB_XREF= gi:34894727
GEN=OSJNBa0011P19.13
TID=OsAffx.2057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0011P19.13 (OSJNBa0011P19.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g316902/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31660OsAffx.31250.1.S1_at11/1111+18013325..18018148expressed protein
LOC_Os11g31670NANA11+18020744..18022384hypothetical protein
LOC_Os11g31680Os.21278.1.S1_at11/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31680Os.10442.1.S2_at1/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31690OsAffx.31252.1.S1_at11/1111+18042435..18047623expressed protein
LOC_Os11g31690OsAffx.2057.1.S1_x_at2/1111+18042435..18047623expressed protein
LOC_Os11g31690OsAffx.2057.1.S1_at2/1111+18042435..18047623expressed protein
LOC_Os11g31700Os.6148.1.S1_at11/1111+18049838..18053579expressed protein
LOC_Os11g31700OsAffx.19108.1.S1_x_at9/1111+18049838..18053579expressed protein
LOC_Os11g31700OsAffx.19108.1.S1_at2/1111+18049838..18053579expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2057.1.S1_at--212--4231Chr01:12403979..12404003 (25 bp)
CCGAGCAGTTTTCTAAGTGGTTTTG
NONE
OsAffx.2057.1.S1_at--33--5011Chr01:12403983..12404007 (25 bp)
GCAGTTTTCTAAGTGGTTTTGGTCT
NONE
OsAffx.2057.1.S1_at--190--1733Chr01:28403570..28403594 (25 bp)
ACCAGGCAGGGACGGACGCGGGCAT
NONE
OsAffx.2057.1.S1_at--824--1832Chr01:28403585..28403609 (25 bp)
ACGCGGGCATCCATCGCCTTGTCGG
NONE
OsAffx.2057.1.S1_at--95--10633Chr05:630835..630859 (25 bp)
TTCGTTTCTCCCGTACCTGCGGAGG
NONE
OsAffx.2057.1.S1_at--878--10393Chr05:630924..630948 (25 bp)
TTTTGGCCCAGCTACAAAATAGCAA
NONE
OsAffx.2057.1.S1_at--254--3573Chr01:28403881..28403904 (24 bp)
CATAAACCAAGTTTTATCCATGTTA
NONE
OsAffx.2057.1.S1_at--493--12Chr01:28403895..28403919 (25 bp)
ATCCATGTTAAACAGTTACTACATC
NONE
OsAffx.2057.1.S1_at--346--2092Chr01:28403915..28403939 (25 bp)
ACATCAAGATAATAGCGTCGCTCCT
NONE
OsAffx.2057.1.S1_at--55--1772Chr01:28403942..28403966 (25 bp)
ACCTCCGTGGGCAGCATGCCCTGAT
NONE
OsAffx.2057.1.S1_at--907--2892Chr01:28404018..28404042 (25 bp)
AAGGTGCACCGCCGATGTGCCGATC
NONE
Target Sequence 
CCGAGCAGTTTTCTAAGTGGTTTTGGTCTACGTGGCAGTCCAGTCCGCCGCCGCGCCGCTGCCGACCTAGGTCCCCCCCG
CGGCGACCAGGCAGGGACGGACGCGGGCATCCATCGCCTTGTCGGGCTCCTCCACTCCCTCCCCACCTCGCGCCGCCGGT
TGACGCGGCGCAGTCGGAGCCCCCCGCAGAGCACGCGCTGCATCTCCTTCGCCCGCGTTCGTTTCTCCCGTACCTGCGGA
GGCCGGTCGCCGACACCCAGCGCCTCCATCGACGCGACGCCGCGGCCTGTCTACGACTCCTCCTCCTTTTGGCCCAGCTA
CAAAATAGCAAACATAAACCAAGTTTTATCCATGTTAAACAGTTACTACATCAAGATAATAGCGTCGCTCCTCCACCTCC
GTGGGCAGCATGCCCTGATCCCTCCTTTCCGCTGTCGCTGCCGCCTTCAATCCTCCGTCGTCAAGGACTCAAGGTGCACC
GCCGATGTGCCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis