Browse Element(s) Details


OsAffx.7269.1.S1_at

Description tigr:9639.m02884
TID=OsAffx.7269.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3171010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31700Os.6148.1.S1_at11/1111+18049838..18053579expressed protein
LOC_Os11g31700OsAffx.19108.1.S1_x_at9/1111+18049838..18053579expressed protein
LOC_Os11g31700OsAffx.19108.1.S1_at2/1111+18049838..18053579expressed protein
LOC_Os11g31710OsAffx.7269.1.S1_at10/1111+18075583..18077140hypothetical protein
LOC_Os11g31720Os.46012.2.S1_x_at6/1111+18094827..18100515retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31720Os.46012.3.S1_x_at6/1111+18094827..18100515retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31720Os.27088.1.A1_x_at5/1111+18094827..18100515retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31720Os.54691.1.S1_x_at1/1111+18094827..18100515retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7269.1.S1_at--466--4511NONE
GCCGAAAAGCGCCTACTGTTGATGT
NONE
OsAffx.7269.1.S1_at--953--5051Chr11:18076248..18076272 (25 bp)
GCAGCAGCTACGTTTCTTGATGAAT
LOC_Os11g31710
OsAffx.7269.1.S1_at--821--1471Chr11:18076217..18076241 (25 bp)
AGAATATGCTCGAACCCAATGATGA
LOC_Os11g31710
OsAffx.7269.1.S1_at--822--10211Chr11:18076063..18076087 (25 bp)
TATTCTGACCTGCTATGGGAACCCA
LOC_Os11g31710
OsAffx.7269.1.S1_at--348--8651Chr11:18076048..18076072 (25 bp)
TGGGAACCCAGCCTATGGACAACAT
LOC_Os11g31710
OsAffx.7269.1.S1_at--277--9831Chr11:18075912..18075936 (25 bp)
TAAAACTTGGCTATAGTGCTGGCAA
LOC_Os11g31710
OsAffx.7269.1.S1_at--877--6931Chr11:18075844..18075868 (25 bp)
GTAGTGGCTCACCAAGATACGACCT
LOC_Os11g31710
OsAffx.7269.1.S1_at--915--1191Chr11:18075830..18075854 (25 bp)
AGATACGACCTACCTGAATTACAAA
LOC_Os11g31710
OsAffx.7269.1.S1_at--401--5051Chr11:18075663..18075687 (25 bp)
GCAGACTACATGATCGAGCTGGTAT
LOC_Os11g31710
OsAffx.7269.1.S1_at--455--6911Chr11:18075642..18075666 (25 bp)
GTATCGCATATACGCCAACTTGGCT
LOC_Os11g31710
OsAffx.7269.1.S1_at--317--6251Chr11:18075613..18075637 (25 bp)
GATGGAGTCCCCAATCCTGAGAAGT
LOC_Os11g31710
Target Sequence 
GCCGAAAAGCGCCTACTGTTGATGTTATAAAACGTCTTAACTGGGAAGCAGCAGCTACGTTTCTTGATGAATTACATAAG
AATATGCTCGAACCCAATGATGAGATGAAACATCTCAAGGATAAACTGAAAAAAAATCCACCTGCAAATTATTCTGACCT
GCTATGGGAACCCAGCCTATGGACAACATATGTGAAGATTCATTTTCTTAGAGAAATATTTTGGTGCATTGAAAGCGATG
AAGTTACAAGAAAGCTTGTACTGAGAAAAATGGATCCTCTTGGAATTGAGAGCTGCATGGTAAAACTTGGCTATAGTGCT
GGCAAGGAAAAGAGTCTTCTACATTCAATTAAATTTCTGAGAAAAAGGGTAGTGGCTCACCAAGATACGACCTACCTGAA
TTACAAAGGGGATAAGAACGATGTTGGCGAATGCAAAAGATTGGTGGAATTACTTGTGCACAAATCGAAGGCAGACTACA
TGATCGAGCTGGTATCGCATATACGCCAACTTGGCTGGGTGATGGAGTCCCCAATCCTGAGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis