Browse Element(s) Details


Os.5713.1.S1_at

Description gb:AK072109.1
DB_XREF= gi:32982132
TID=Os.5713.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013117J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013117J09, full insert sequence.
FL= gb:AK065391.1 gb:AK072109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g316504/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31620Os.24828.1.S1_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.24828.1.S2_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.22714.1.A1_at1/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31630OsAffx.19106.1.S1_at10/1111+17993146..17995156hypothetical protein
LOC_Os11g31630Os.38320.2.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31630OsAffx.16931.1.S1_at1/1111+17993146..17995156hypothetical protein
LOC_Os11g31640Os.7816.1.S1_at11/1111+18000817..18005033Serine palmitoyltransferase 2, putative, expressed
LOC_Os11g31650Os.5713.1.S1_at4/1111+18007057..18009546hypothetical protein
LOC_Os11g31660OsAffx.31250.1.S1_at11/1111+18013325..18018148expressed protein
LOC_Os11g31670NANA11+18020744..18022384hypothetical protein
LOC_Os11g31680Os.21278.1.S1_at11/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31680Os.10442.1.S2_at1/1111+18023312..18038500retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5713.1.S1_at--643--5851Chr11:18009417..18009441 (25 bp)
GACCAAGGTCAACCATACTGGCAAA
LOC_Os11g31650
Os.5713.1.S1_at--904--2291Chr11:18009467..18009491 (25 bp)
AAATGGCTCAAAGCCTGGGCCAGAT
LOC_Os11g31650
Os.5713.1.S1_at--1047--6571Chr11:18009489..18009513 (25 bp)
GATTGCAAAGTTCAACCGCCGATAC
LOC_Os11g31650
Os.5713.1.S1_at--976--1791Chr11:18009503..18009527 (25 bp)
ACCGCCGATACCAGCAGGAATCTGA
LOC_Os11g31650
Os.5713.1.S1_at--816--4771Chr11:18009547..18009571 (25 bp)
GCTGCTGTCAGCAAGGAGCTACATA
NONE
Os.5713.1.S1_at--265--7771Chr11:18009593..18009617 (25 bp)
GGTGCTATGTTTATCGTCCAGGAAC
NONE
Os.5713.1.S1_at--1115--10671Chr11:18009653..18009677 (25 bp)
TTCCATGTAGCCATCTGATCATTGT
NONE
Os.5713.1.S1_at--1126--6411Chr11:18009669..18009693 (25 bp)
GATCATTGTGGTTTATCCCTGTAGT
NONE
Os.5713.1.S1_at--600--6831Chr11:18009692..18009716 (25 bp)
GTTTCAGTTCTACCATTCACGAATT
NONE
Os.5713.1.S1_at--857--171Chr11:18009728..18009752 (25 bp)
ATTTTTGTTGCTCAATTCTGCCCGA
NONE
Os.5713.1.S1_at--527--8291Chr11:18009838..18009862 (25 bp)
GGCTTGTCATGCTACGTCTCTTTTA
NONE
Target Sequence 
GACCAAGGTCAACCATACTGGCAAAGTGTATCATATGAGAGCAAAGCGTCAAATGGCTCAAAGCCTGGGCCAGATTGCAA
AGTTCAACCGCCGATACCAGCAGGAATCTGAGGAAAACAAAGAAAAGTAGGCTGCTGTCAGCAAGGAGCTACATATGCTC
TAAGGCAGATTAGTGTGGTGCTATGTTTATCGTCCAGGAACATTGCTCATGGATCTTTGTTTTGGATGTCATCCTCTTCC
ATGTAGCCATCTGATCATTGTGGTTTATCCCTGTAGTTTCAGTTCTACCATTCACGAATTTTTCTNGGAGCTATTTTTGT
TGCTCAATTCTGCCCGATATCTNTAGNGANTNNAGCATGCTACTTNATGTTTTGTTGATTTNNGNNNNNNNCTNNNTNNN
NNNNTGNANNNTNGNNTCGTTTGGCTTGTCATGCTACGTCTCTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis