Browse Element(s) Details


OsAffx.7680.1.S1_at

Description tigr:9640.m02272
TID=OsAffx.7680.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2389011/11expressed protein
LOC_Os05g324806/11transposon protein, putative, Mutator sub-class
LOC_Os11g316001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23840Os.47463.1.S1_x_at4/1112+13552037..13556725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g23840Os.14491.2.S1_x_at4/1112+13552037..13556725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g23849NANA12+13562606..13563289NA
LOC_Os12g23860OsAffx.19790.1.S1_at11/1112+13569909..13570430hypothetical protein
LOC_Os12g23860Os.39814.1.S1_at1/1112+13569909..13570430hypothetical protein
LOC_Os12g23869OsAffx.16314.1.S1_at1/1112+13574084..13574766hypothetical protein
LOC_Os12g23880OsAffx.10439.1.S1_at1/1112+13575140..13577488transposon protein, putative, Mutator sub-class
LOC_Os12g23880Os.10731.2.A1_at1/1112+13575140..13577488transposon protein, putative, Mutator sub-class
LOC_Os12g23890OsAffx.7680.1.S1_at11/1112+13579956..13580287expressed protein
LOC_Os12g23900OsAffx.7681.1.S1_at11/1112+13584799..13585449hypothetical protein
LOC_Os12g23910NANA12+13587197..13590159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23920NANA12+13590476..13596565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23930OsAffx.31853.1.S1_at11/1112+13597179..13598474Protein kinase domain containing protein
LOC_Os12g23940OsAffx.19791.1.S1_at11/1112+13600373..13601551Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7680.1.S1_at--1032--7512Chr05:18890971..18890995 (25 bp)
GTGGAGGAGCCTGCGCTTAGCTTAA
LOC_Os05g32480
OsAffx.7680.1.S1_at--158--973Chr11:17967321..17967341 (21 bp)
AGGAGCCTGCGCTTAGCTTAAGTGT
LOC_Os11g31600
OsAffx.7680.1.S1_at--483--5872Chr05:18890977..18891001 (25 bp)
GAGCCTGCGCTTAGCTTAAGTGTGT
LOC_Os05g32480
OsAffx.7680.1.S1_at--710--4472Chr05:18890979..18891003 (25 bp)
GCCTGCGCTTAGCTTAAGTGTGTTA
LOC_Os05g32480
OsAffx.7680.1.S1_at--976--4872Chr05:18890985..18891009 (25 bp)
GCTTAGCTTAAGTGTGTTAGAACCC
LOC_Os05g32480
OsAffx.7680.1.S1_at--537--4891Chr12:13580083..13580107 (25 bp)
GCTTAAGTGTGTTAGAACCCGGTGT
LOC_Os12g23890
OsAffx.7680.1.S1_at--557--9772Chr05:18890993..18891023 (25 bp)
TAAGTGTGTTAGAACCCGGTGTTGG
LOC_Os05g32480
OsAffx.7680.1.S1_at--63--10571Chr12:13580027..13580051 (25 bp)
TTCTTCGTTTCTCCTGCTGGAGTCG
LOC_Os12g23890
OsAffx.7680.1.S1_at--865--9491Chr12:13580018..13580042 (25 bp)
TCTCCTGCTGGAGTCGTGGAACAAG
LOC_Os12g23890
OsAffx.7680.1.S1_at--934--4231Chr12:13580015..13580039 (25 bp)
CCTGCTGGAGTCGTGGAACAAGTTG
LOC_Os12g23890
OsAffx.7680.1.S1_at--858--5271Chr12:13579988..13580012 (25 bp)
GAATGTCACAGCGTGATTTTTGTTT
LOC_Os12g23890
Target Sequence 
GTGGAGGAGCCTGCGCTTAGCTTAAGTGTGTTAGAACCCGGTGTTGGTGTTGGTGGTGGTGGTGGTGGTGGTGTTTTCTT
CGTTTCTCCTGCTGGAGTCGTGGAACAAGTTGGGGAATGTCACAGCGTGATTTTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis